Variant report

Variant	rs4252775
Chromosome Location	chr4:77995574-77995575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77869773..77871632-chr4:77995514..77998178,4	K562	blood:
2	chr4:77993925..77999822-chr4:78072652..78081114,32	MCF-7	breast:
3	chr4:77975545..77980821-chr4:77994993..77998408,5	MCF-7	breast:
4	chr4:77994543..78000148-chr4:78076403..78082799,9	K562	blood:
5	chr4:77995405..77999334-chr4:78000731..78006327,9	MCF-7	breast:
6	chr4:77994285..77999121-chr4:78003590..78007383,5	K562	blood:
7	chr4:77994107..77999899-chr4:78076204..78082875,32	MCF-7	breast:
8	chr4:77870359..77873653-chr4:77995177..77998877,4	MCF-7	breast:
9	chr4:77979701..77986849-chr4:77990863..77998763,10	MCF-7	breast:
10	chr4:77722957..77725210-chr4:77994122..77996396,2	K562	blood:
11	chr4:77977102..77979783-chr4:77995512..77998143,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000214062	Chromatin interaction
ENSG00000138764	Chromatin interaction
ENSG00000138758	Chromatin interaction
ENSG00000118816	Chromatin interaction
ENSG00000224218	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17002342	1.00[AMR][1000 genomes]
rs17002354	1.00[AMR][1000 genomes]
rs17002420	1.00[MEX][hapmap]
rs17002482	1.00[MEX][hapmap]
rs2009261	1.00[MEX][hapmap]
rs41375744	1.00[MEX][hapmap]
rs41495248	1.00[MEX][hapmap]
rs4252749	1.00[AMR][1000 genomes]
rs4252791	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs4252812	1.00[AMR][1000 genomes]
rs4252859	1.00[AMR][1000 genomes]
rs4252885	0.91[AFR][1000 genomes]
rs4252934	1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252939	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252944	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4476626	1.00[AMR][1000 genomes]
rs4557282	1.00[MEX][hapmap]
rs57303670	1.00[AMR][1000 genomes]
rs60458841	1.00[AMR][1000 genomes]
rs6817626	1.00[MEX][hapmap]
rs6818356	1.00[MEX][hapmap]
rs6840204	1.00[MEX][hapmap]
rs73826493	1.00[AMR][1000 genomes]
rs73826720	1.00[AMR][1000 genomes]
rs73826723	1.00[AMR][1000 genomes]
rs73829817	1.00[AMR][1000 genomes]
rs7667891	1.00[MEX][hapmap]
rs7690082	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879499	chr4:77990904-78003416	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3330627	chr4:77995278-77997926	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3357193	chr4:77995453-77998301	Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77975800-77995600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:77990600-77995800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:77992000-77995600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:77992000-77996200	Weak transcription	Spleen	Spleen
5	chr4:77992000-77998200	Active TSS	GM12878-XiMat	blood
6	chr4:77993200-77996000	Flanking Active TSS	Dnd41	blood
7	chr4:77993400-77996000	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr4:77993400-77996000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr4:77993600-77996000	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr4:77993600-77996000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
11	chr4:77993600-77996000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:77993600-77996200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:77993600-77998200	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr4:77993600-77998400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:77993800-77995800	Flanking Active TSS	HUVEC	blood vessel
16	chr4:77993800-77995800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr4:77993800-77995800	Flanking Active TSS	NH-A	brain
18	chr4:77993800-77996000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:77993800-77996000	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr4:77993800-77996000	Flanking Active TSS	Osteobl	bone
21	chr4:77993800-77998600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:77994000-77995600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:77994000-77996000	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr4:77994000-77996000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr4:77994000-77997800	Active TSS	Ovary	ovary
26	chr4:77994000-77998000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:77994000-77998400	Active TSS	Aorta	Aorta
28	chr4:77994000-77998600	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr4:77994200-77995600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:77994200-77995800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr4:77994200-77995800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr4:77994200-77995800	Flanking Active TSS	Hela-S3	cervix
33	chr4:77994200-77996000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr4:77994200-77996000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:77994200-77996600	Active TSS	Right Atrium	heart
36	chr4:77994200-77998000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:77994200-77998000	Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr4:77994200-77998000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:77994200-77998200	Active TSS	HSMMtube	muscle
40	chr4:77994200-77998200	Active TSS	NHDF-Ad	bronchial
41	chr4:77994400-77995600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr4:77994400-77995600	Enhancers	Placenta Amnion	Placenta Amnion
43	chr4:77994400-77995600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr4:77994400-77995600	Enhancers	Stomach Mucosa	stomach
45	chr4:77994400-77995800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:77994400-77995800	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr4:77994400-77996000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr4:77994400-77996000	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr4:77994400-77996000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr4:77994400-77996000	Flanking Active TSS	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links