Variant report

Variant	rs4252934
Chromosome Location	chr4:77971893-77971894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77944617..77946344-chr4:77971042..77973361,2	K562	blood:
2	chr4:77971112..77973891-chr4:77979862..77982269,2	K562	blood:
3	chr4:77964632..77967397-chr4:77971133..77973917,2	MCF-7	breast:
4	chr4:77966927..77969832-chr4:77971202..77972890,2	K562	blood:
5	chr4:77971129..77974838-chr4:77995364..77997908,3	MCF-7	breast:
6	chr4:77960790..77963034-chr4:77970057..77971894,2	K562	blood:
7	chr4:77971806..77975374-chr4:77976932..77979619,3	MCF-7	breast:
8	chr4:77969411..77972049-chr4:77973762..77976688,2	K562	blood:
9	chr4:77963082..77965781-chr4:77970449..77973102,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD56-6	chr4:77971553-77973268	NONHSAT097037

No data

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

rs_ID	r²[population]
rs17002342	1.00[AMR][1000 genomes]
rs17002354	1.00[AMR][1000 genomes]
rs17002420	1.00[MEX][hapmap]
rs17002482	1.00[MEX][hapmap]
rs2009261	1.00[MEX][hapmap]
rs41375744	1.00[MEX][hapmap]
rs4252749	1.00[AMR][1000 genomes]
rs4252775	1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252791	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4252812	1.00[AMR][1000 genomes]
rs4252859	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs4252885	1.00[AFR][1000 genomes]
rs4252939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4476626	1.00[AMR][1000 genomes]
rs4557282	1.00[MEX][hapmap]
rs57303670	1.00[AMR][1000 genomes]
rs60458841	1.00[AMR][1000 genomes]
rs6817626	1.00[MEX][hapmap]
rs6818356	1.00[MEX][hapmap]
rs6840204	1.00[MEX][hapmap]
rs73826493	1.00[AMR][1000 genomes]
rs73826720	1.00[AMR][1000 genomes]
rs73826723	1.00[AMR][1000 genomes]
rs73829817	1.00[AMR][1000 genomes]
rs7667891	1.00[MEX][hapmap]
rs7690082	1.00[AMR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77937400-77981400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:77944200-77983200	Weak transcription	Small Intestine	intestine
3	chr4:77953000-77973400	Weak transcription	Aorta	Aorta
4	chr4:77953800-77973400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:77954800-77975600	Weak transcription	Fetal Brain Male	brain
6	chr4:77956200-77978600	Weak transcription	Colonic Mucosa	Colon
7	chr4:77957000-77993600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:77957000-77994200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:77957400-77973400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:77960400-77983000	Weak transcription	Gastric	stomach
11	chr4:77961600-77975400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:77961800-77978000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:77963800-77981800	Strong transcription	GM12878-XiMat	blood
14	chr4:77964600-77972400	Weak transcription	Brain Germinal Matrix	brain
15	chr4:77964600-77989000	Strong transcription	Fetal Thymus	thymus
16	chr4:77965800-77973600	Strong transcription	HSMM	muscle
17	chr4:77965800-77979400	Strong transcription	Fetal Muscle Leg	muscle
18	chr4:77965800-77981600	Weak transcription	Right Atrium	heart
19	chr4:77966000-77972600	Strong transcription	NHDF-Ad	bronchial
20	chr4:77966000-77981400	Strong transcription	Primary B cells from cord blood	blood
21	chr4:77966200-77980600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:77966200-77988600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr4:77966400-77987600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:77966600-77973400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:77966600-77992800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:77966800-77977000	Strong transcription	Fetal Lung	lung
27	chr4:77966800-77979800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:77966800-77988600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:77967000-77973600	Strong transcription	Adipose Nuclei	Adipose
30	chr4:77967000-77988600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr4:77967200-77972200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:77967200-77973400	Strong transcription	Osteobl	bone
33	chr4:77967200-77973600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:77967200-77976600	Strong transcription	Primary hematopoietic stem cells	blood
35	chr4:77967200-77980000	Strong transcription	Duodenum Mucosa	Duodenum
36	chr4:77967200-77981200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:77967200-77985600	Strong transcription	NH-A	brain
38	chr4:77967200-77987600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr4:77967200-77987600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr4:77967200-77987600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:77967200-77987600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr4:77967200-77987600	Strong transcription	Placenta	Placenta
43	chr4:77967200-77988200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr4:77967200-77988600	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr4:77967200-77988600	Strong transcription	Dnd41	blood
46	chr4:77967200-77988800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:77967200-77989200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:77967200-77989200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr4:77967200-77989600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:77967200-77993200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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