Variant report

Variant	rs7667891
Chromosome Location	chr4:78003551-78003552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77995405..77999334-chr4:78000731..78006327,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10002443	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap]
rs10006033	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[ASN][1000 genomes]
rs10031961	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10470896	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap]
rs10856952	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs11559161	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap]
rs12186	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12644714	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1472399	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16996592	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs17002332	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap]
rs17002334	0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17002336	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17002339	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs17002346	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17002420	1.00[MEX][hapmap]
rs17002482	1.00[MEX][hapmap]
rs2009261	1.00[MEX][hapmap]
rs2016811	1.00[CEU][hapmap]
rs2645668	1.00[GIH][hapmap]
rs28715145	0.98[ASN][1000 genomes]
rs41375744	1.00[MEX][hapmap]
rs41495248	1.00[MEX][hapmap]
rs4252773	1.00[GIH][hapmap]
rs4252775	1.00[MEX][hapmap]
rs4252813	0.91[ASN][1000 genomes]
rs4252858	0.98[ASN][1000 genomes]
rs4252887	0.94[ASN][1000 genomes]
rs4252896	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[ASN][1000 genomes]
rs4252897	0.94[ASN][1000 genomes]
rs4252913	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4252930	0.93[ASN][1000 genomes]
rs4252934	1.00[MEX][hapmap]
rs4557282	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859740	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6817626	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818356	1.00[MEX][hapmap]
rs6824360	0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6837546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840204	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980220	chr4:78002601-78004358	Weak transcription Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77998200-78004200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:77998400-78004200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:77998400-78004400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:77998400-78013800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:77998400-78016800	Weak transcription	Aorta	Aorta
6	chr4:77998600-78003600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:77998600-78004400	Weak transcription	Placenta	Placenta
8	chr4:77998600-78004600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:77998800-78004600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:77998800-78005000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:77998800-78020600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:77999200-78003800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:77999400-78004400	Weak transcription	Fetal Lung	lung
14	chr4:77999400-78005000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:77999400-78006600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:77999400-78012200	Weak transcription	HMEC	breast
17	chr4:77999600-78005000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:77999800-78003600	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:77999800-78004800	Weak transcription	NHEK	skin
20	chr4:77999800-78010600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:77999800-78013400	Weak transcription	Thymus	Thymus
22	chr4:78000000-78003600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:78000000-78012200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:78001000-78014800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:78001400-78014400	Weak transcription	Fetal Intestine Small	intestine
26	chr4:78001600-78016400	Weak transcription	Fetal Stomach	stomach
27	chr4:78002400-78004000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr4:78002600-78005000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:78002600-78013800	Weak transcription	Primary B cells from cord blood	blood
30	chr4:78002800-78004200	Weak transcription	Primary T cells from cord blood	blood
31	chr4:78003400-78004200	Enhancers	Psoas Muscle	Psoas
32	chr4:78003400-78004400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr4:78003400-78004600	Enhancers	Skeletal Muscle Male	skeletal muscle

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