Variant report

Variant	rs12186
Chromosome Location	chr4:77969013-77969014
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77966927..77969832-chr4:77971202..77972890,2	K562	blood:
2	chr4:77965514..77967728-chr4:77968242..77970237,2	K562	blood:
3	chr4:77966430..77969302-chr4:77995176..77998731,3	MCF-7	breast:
4	chr4:77967457..77969827-chr4:77991590..77994331,2	K562	blood:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10002443	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs10006033	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031961	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs10470896	0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs10856952	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11559161	1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs12644714	0.83[ASN][1000 genomes]
rs16996592	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17002332	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs17002334	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17002336	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs17002339	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs17002346	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs2279711	0.80[CHB][hapmap]
rs28541859	0.83[ASN][1000 genomes]
rs28587298	0.80[ASN][1000 genomes]
rs28626429	0.83[ASN][1000 genomes]
rs28685589	0.83[ASN][1000 genomes]
rs28715145	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4252768	0.87[EUR][1000 genomes]
rs4252773	0.93[EUR][1000 genomes]
rs4252813	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4252858	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4252887	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4252896	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4252897	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4252913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4252930	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4557282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4859740	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6817626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6824360	1.00[CHB][hapmap]
rs6837546	0.93[ASN][1000 genomes]
rs7667891	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77937400-77981400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:77943800-77969200	Weak transcription	Stomach Mucosa	stomach
3	chr4:77944200-77983200	Weak transcription	Small Intestine	intestine
4	chr4:77946000-77971800	Strong transcription	Fetal Muscle Trunk	muscle
5	chr4:77950200-77969200	Weak transcription	Thymus	Thymus
6	chr4:77950600-77969400	Weak transcription	Right Ventricle	heart
7	chr4:77951800-77969400	Weak transcription	Spleen	Spleen
8	chr4:77953000-77969200	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:77953000-77973400	Weak transcription	Aorta	Aorta
10	chr4:77953800-77973400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:77954800-77975600	Weak transcription	Fetal Brain Male	brain
12	chr4:77955000-77969200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:77955200-77969200	Weak transcription	Brain Angular Gyrus	brain
14	chr4:77955200-77969400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:77956200-77978600	Weak transcription	Colonic Mucosa	Colon
16	chr4:77957000-77969200	Weak transcription	Brain Substantia Nigra	brain
17	chr4:77957000-77993600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:77957000-77994200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:77957400-77973400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:77959400-77969200	Weak transcription	Lung	lung
21	chr4:77959400-77969200	Weak transcription	Pancreas	Pancrea
22	chr4:77960200-77969400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:77960400-77983000	Weak transcription	Gastric	stomach
24	chr4:77960800-77969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:77960800-77969200	Weak transcription	Ovary	ovary
26	chr4:77960800-77969400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:77961600-77975400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:77961800-77978000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr4:77962000-77969200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:77962200-77969200	Weak transcription	Brain Anterior Caudate	brain
31	chr4:77963800-77981800	Strong transcription	GM12878-XiMat	blood
32	chr4:77964600-77972400	Weak transcription	Brain Germinal Matrix	brain
33	chr4:77964600-77989000	Strong transcription	Fetal Thymus	thymus
34	chr4:77965200-77969200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr4:77965600-77969400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:77965600-77970000	Strong transcription	HSMMtube	muscle
37	chr4:77965800-77969400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:77965800-77969400	Weak transcription	Esophagus	oesophagus
39	chr4:77965800-77969400	Weak transcription	Fetal Intestine Small	intestine
40	chr4:77965800-77969400	Weak transcription	Psoas Muscle	Psoas
41	chr4:77965800-77971000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr4:77965800-77973600	Strong transcription	HSMM	muscle
43	chr4:77965800-77979400	Strong transcription	Fetal Muscle Leg	muscle
44	chr4:77965800-77981600	Weak transcription	Right Atrium	heart
45	chr4:77966000-77971200	Strong transcription	HMEC	breast
46	chr4:77966000-77972600	Strong transcription	NHDF-Ad	bronchial
47	chr4:77966000-77981400	Strong transcription	Primary B cells from cord blood	blood
48	chr4:77966200-77969200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:77966200-77969400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr4:77966200-77971000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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