Variant report

Variant	rs12644714
Chromosome Location	chr4:78019180-78019181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78016870..78019956-chr4:78074951..78081229,6	MCF-7	breast:
2	chr4:78016448..78019261-chr4:78148834..78151500,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138764	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10006033	0.83[ASN][1000 genomes]
rs10856952	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12186	0.83[ASN][1000 genomes]
rs28715145	0.88[ASN][1000 genomes]
rs4252813	0.81[ASN][1000 genomes]
rs4252858	0.88[ASN][1000 genomes]
rs4252887	0.84[ASN][1000 genomes]
rs4252896	0.83[ASN][1000 genomes]
rs4252897	0.84[ASN][1000 genomes]
rs4252913	0.84[ASN][1000 genomes]
rs4252930	0.83[ASN][1000 genomes]
rs4557282	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4859740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817626	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6837546	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7667891	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77998800-78020600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:78015000-78021200	Weak transcription	Primary T cells from cord blood	blood
3	chr4:78015200-78019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:78015600-78019400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:78016800-78019800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:78016800-78021400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr4:78016800-78021600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:78017000-78021200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:78017000-78021200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:78017000-78021200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:78017000-78021400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:78017000-78021400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:78017000-78021400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:78017000-78021600	Weak transcription	Primary B cells from cord blood	blood
15	chr4:78017200-78019600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:78017200-78021000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:78017200-78021400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:78017200-78021400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:78017200-78025800	Weak transcription	HMEC	breast
20	chr4:78017200-78026000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:78017600-78021400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:78018400-78019600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr4:78018600-78019200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:78018600-78019200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr4:78018600-78019600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr4:78019000-78022200	Enhancers	Primary hematopoietic stem cells	blood

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