Variant report

Variant	rs4859740
Chromosome Location	chr4:78015443-78015444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78013138..78016102-chr4:78077240..78079259,3	MCF-7	breast:
2	chr4:78015322..78018210-chr4:78060789..78063624,2	K562	blood:

Variant related genes	Relation type
ENSG00000138764	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10006033	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10856952	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12186	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12644714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16996592	0.82[JPT][hapmap]
rs17002336	0.81[JPT][hapmap]
rs17002339	0.82[JPT][hapmap]
rs2016811	1.00[CEU][hapmap]
rs28715145	0.88[ASN][1000 genomes]
rs4252813	0.81[ASN][1000 genomes]
rs4252858	0.88[ASN][1000 genomes]
rs4252887	0.84[ASN][1000 genomes]
rs4252896	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4252897	0.84[ASN][1000 genomes]
rs4252913	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4252930	0.83[ASN][1000 genomes]
rs4557282	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6817626	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6837546	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7667891	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77998400-78016800	Weak transcription	Aorta	Aorta
2	chr4:77998800-78020600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:78001600-78016400	Weak transcription	Fetal Stomach	stomach
4	chr4:78006800-78016600	Weak transcription	K562	blood
5	chr4:78011400-78016200	Weak transcription	Fetal Heart	heart
6	chr4:78011600-78016400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:78011800-78016800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:78012200-78015800	Enhancers	HMEC	breast
9	chr4:78012200-78016400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:78012200-78017200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:78012200-78017200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:78013600-78015600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:78013600-78017000	Enhancers	HUVEC	blood vessel
14	chr4:78014400-78016600	Enhancers	Fetal Intestine Large	intestine
15	chr4:78014600-78016400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:78014600-78016400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:78014600-78016400	Weak transcription	Fetal Kidney	kidney
18	chr4:78014600-78016800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:78014600-78019000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:78014800-78016400	Weak transcription	Osteobl	bone
21	chr4:78014800-78018600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr4:78015000-78016200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:78015000-78016400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:78015000-78017200	Enhancers	NHEK	skin
25	chr4:78015000-78021200	Weak transcription	Primary T cells from cord blood	blood
26	chr4:78015200-78016400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr4:78015200-78016400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr4:78015200-78016400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:78015200-78016400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:78015200-78016400	Weak transcription	HSMMtube	muscle
31	chr4:78015200-78016400	Weak transcription	NH-A	brain
32	chr4:78015200-78016600	Weak transcription	Stomach Mucosa	stomach
33	chr4:78015200-78016600	Weak transcription	HSMM	muscle
34	chr4:78015200-78019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:78015400-78016400	Weak transcription	Primary B cells from cord blood	blood
36	chr4:78015400-78016400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:78015400-78016400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:78015400-78016400	Weak transcription	Fetal Intestine Small	intestine

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