Variant report

Variant	rs10856952
Chromosome Location	chr4:78040544-78040545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78039294..78043818-chr4:78076363..78079776,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138764	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10002443	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap]
rs10006033	0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs10031961	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10470896	0.81[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap]
rs11559161	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap]
rs12186	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12644714	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1472399	1.00[GIH][hapmap]
rs16996592	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs17002332	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap]
rs17002334	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap]
rs17002336	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17002339	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs17002346	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap]
rs2016811	1.00[CEU][hapmap]
rs2645668	1.00[GIH][hapmap]
rs4252773	1.00[GIH][hapmap]
rs4252896	0.81[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs4252913	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4557282	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs4859740	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6817626	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs6824360	0.90[CHB][hapmap];1.00[GIH][hapmap]
rs6837546	0.95[EUR][1000 genomes]
rs7667891	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links