Variant report

Variant	rs10470896
Chromosome Location	chr4:77950382-77950383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10002443	1.00[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006033	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs10031961	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10856952	0.81[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap]
rs11559161	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12186	0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1472399	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16996592	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002332	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002334	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17002336	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002339	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17002346	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279711	0.85[EUR][1000 genomes]
rs2645668	1.00[GIH][hapmap]
rs2645698	0.86[MEX][hapmap]
rs28541859	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28587298	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28626429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28685589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076784	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4076785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4252773	1.00[GIH][hapmap]
rs4252887	0.82[ASN][1000 genomes]
rs4252896	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs4252897	0.82[ASN][1000 genomes]
rs4252913	0.90[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4252930	0.83[ASN][1000 genomes]
rs4557282	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap]
rs6817626	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap]
rs6824360	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7667891	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10470896	DDX3Y	trans	lymphoblastoid	seeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77928200-77960800	Strong transcription	Fetal Intestine Large	intestine
2	chr4:77929400-77961800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:77931400-77952000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:77932200-77962000	Strong transcription	Fetal Brain Female	brain
5	chr4:77934000-77957400	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr4:77935600-77950800	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr4:77935800-77957800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr4:77935800-77960800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:77936000-77957600	Strong transcription	Primary hematopoietic stem cells	blood
10	chr4:77936000-77959200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:77936200-77961800	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:77937400-77981400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:77939800-77960800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:77940000-77950400	Strong transcription	Fetal Lung	lung
15	chr4:77940000-77952600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:77940000-77956800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:77942000-77952800	Weak transcription	Brain Angular Gyrus	brain
18	chr4:77942400-77952200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:77942800-77961000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:77943200-77954600	Weak transcription	Brain Substantia Nigra	brain
21	chr4:77943400-77952000	Weak transcription	A549	lung
22	chr4:77943800-77969200	Weak transcription	Stomach Mucosa	stomach
23	chr4:77944000-77955800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:77944000-77957600	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:77944000-77962800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:77944200-77952600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:77944200-77953200	Strong transcription	Fetal Stomach	stomach
28	chr4:77944200-77956200	Strong transcription	HMEC	breast
29	chr4:77944200-77956400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:77944200-77957200	Strong transcription	Stomach Smooth Muscle	stomach
31	chr4:77944200-77961200	Strong transcription	Placenta	Placenta
32	chr4:77944200-77983200	Weak transcription	Small Intestine	intestine
33	chr4:77944400-77952600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:77944400-77954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr4:77944400-77956000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:77944400-77956200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr4:77944400-77956800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:77944400-77957000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:77944400-77957400	Strong transcription	Adipose Nuclei	Adipose
40	chr4:77944400-77957600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr4:77944400-77959800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:77944400-77960800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:77944400-77965400	Weak transcription	Fetal Heart	heart
44	chr4:77944600-77951600	Strong transcription	Fetal Brain Male	brain
45	chr4:77945000-77952800	Strong transcription	HSMMtube	muscle
46	chr4:77945000-77960000	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr4:77945000-77960200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:77945000-77962600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr4:77945000-77962800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:77945400-77950600	Strong transcription	Brain Inferior Temporal Lobe	brain

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