The 2.0 version of rSNPBase

Variant report

Variant rs28541859
Chromosome Location chr4:77940418-77940419
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:77924800-77941000 Weak transcription Colon Smooth Muscle Colon
2 chr4:77928200-77960800 Strong transcription Fetal Intestine Large intestine
3 chr4:77928600-77947600 Weak transcription Psoas Muscle Psoas
4 chr4:77928800-77942400 Strong transcription Fetal Muscle Trunk muscle
5 chr4:77929200-77943000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr4:77929400-77941600 Weak transcription Thymus Thymus
7 chr4:77929400-77944800 Weak transcription Primary B cells from peripheral blood blood
8 chr4:77929400-77961800 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr4:77929600-77942400 Strong transcription Placenta Placenta
10 chr4:77931400-77949400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr4:77931400-77952000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr4:77932200-77962000 Strong transcription Fetal Brain Female brain
13 chr4:77932800-77941800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr4:77932800-77941800 Strong transcription HSMMtube muscle
15 chr4:77932800-77942000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr4:77932800-77942200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr4:77932800-77942800 Strong transcription HMEC breast
18 chr4:77932800-77944000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr4:77933000-77942800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr4:77933200-77942000 Weak transcription Stomach Mucosa stomach
21 chr4:77933200-77943400 Weak transcription Hela-S3 cervix
22 chr4:77933800-77941800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr4:77934000-77957400 Strong transcription Rectal Mucosa Donor 31 rectum
24 chr4:77934600-77944000 Strong transcription Fetal Adrenal Gland Adrenal Gland
25 chr4:77935000-77942400 Weak transcription Right Atrium heart
26 chr4:77935200-77941800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr4:77935400-77940600 Weak transcription Primary T cells fromperipheralblood blood
28 chr4:77935400-77943800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr4:77935600-77942200 Strong transcription Cortex derived primary cultured neurospheres brain
30 chr4:77935600-77950800 Strong transcription Rectal Mucosa Donor 29 rectum
31 chr4:77935800-77957800 Strong transcription Duodenum Mucosa Duodenum
32 chr4:77935800-77960800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr4:77936000-77943000 Strong transcription Duodenum Smooth Muscle Duodenum
34 chr4:77936000-77944600 Strong transcription NHEK skin
35 chr4:77936000-77957600 Strong transcription Primary hematopoietic stem cells blood
36 chr4:77936000-77959200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr4:77936200-77942400 Strong transcription Ovary ovary
38 chr4:77936200-77961800 Strong transcription Skeletal Muscle Female skeletal muscle
39 chr4:77936400-77941400 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr4:77936400-77949200 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr4:77936600-77942000 Strong transcription Muscle Satellite Cultured Cells --
42 chr4:77936600-77949000 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr4:77936800-77942800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr4:77937000-77941200 Weak transcription Primary monocytes fromperipheralblood blood
45 chr4:77937000-77941200 Strong transcription NHLF lung
46 chr4:77937000-77941600 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr4:77937000-77941600 Weak transcription A549 lung
48 chr4:77937000-77943000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr4:77937000-77949200 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr4:77937200-77941200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015