Variant report

Variant	rs2279711
Chromosome Location	chr4:77921314-77921315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77918715..77921409-chr4:77935118..77936760,2	K562	blood:
2	chr4:77921163..77923927-chr4:77964652..77966936,2	K562	blood:
3	chr4:77919457..77921584-chr4:77925494..77928132,2	K562	blood:

Variant related genes	Relation type
ENSG00000138758	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10002443	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs10006033	1.00[MEX][hapmap]
rs10031961	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs10470896	0.85[EUR][1000 genomes]
rs11559161	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs12186	0.80[CHB][hapmap]
rs1472399	0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16996592	0.85[EUR][1000 genomes]
rs17002332	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs17002334	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs17002336	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs17002339	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs17002346	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs2703137	0.83[MKK][hapmap]
rs28541859	0.85[EUR][1000 genomes]
rs28587298	0.85[EUR][1000 genomes]
rs28626429	0.85[EUR][1000 genomes]
rs28685589	0.85[EUR][1000 genomes]
rs4076785	0.85[EUR][1000 genomes]
rs4252773	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4252896	1.00[MEX][hapmap]
rs4252913	0.80[CHB][hapmap]
rs4557282	0.80[CHB][hapmap]
rs6817626	0.80[CHB][hapmap]
rs6824360	0.80[CHB][hapmap];0.85[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77903600-77936000	Weak transcription	Esophagus	oesophagus
2	chr4:77912600-77923000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:77914800-77923400	Weak transcription	Brain Angular Gyrus	brain
4	chr4:77915600-77924000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:77915600-77924000	Weak transcription	Right Atrium	heart
6	chr4:77915600-77936800	Weak transcription	Brain Substantia Nigra	brain
7	chr4:77915800-77922600	Weak transcription	Psoas Muscle	Psoas
8	chr4:77915800-77922800	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:77915800-77923000	Weak transcription	Small Intestine	intestine
10	chr4:77915800-77923600	Weak transcription	Right Ventricle	heart
11	chr4:77916000-77928000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:77916200-77928200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:77916600-77922400	Genic enhancers	NHLF	lung
14	chr4:77916800-77921800	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr4:77916800-77922400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:77916800-77922800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:77917000-77922200	Strong transcription	HMEC	breast
18	chr4:77917000-77922400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:77917000-77923000	Strong transcription	Adipose Nuclei	Adipose
20	chr4:77917200-77922200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:77917200-77922800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:77917400-77921600	Strong transcription	Fetal Kidney	kidney
23	chr4:77917400-77925400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:77917400-77928000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:77917400-77928000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr4:77917400-77928000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr4:77917400-77928400	Strong transcription	Fetal Muscle Trunk	muscle
28	chr4:77917600-77922200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr4:77917600-77923200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr4:77917600-77924000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr4:77917800-77923000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:77917800-77923200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:77917800-77924600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:77918000-77922400	Strong transcription	Fetal Intestine Large	intestine
35	chr4:77918200-77922800	Strong transcription	Primary hematopoietic stem cells	blood
36	chr4:77918400-77922000	Strong transcription	Liver	Liver
37	chr4:77918400-77922400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
38	chr4:77918400-77924200	Weak transcription	Fetal Brain Male	brain
39	chr4:77918400-77937400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:77918600-77922600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:77918800-77922000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr4:77918800-77922000	Strong transcription	A549	lung
43	chr4:77918800-77923000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr4:77919000-77921800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:77919000-77922400	Genic enhancers	NH-A	brain
46	chr4:77919000-77922800	Weak transcription	Fetal Heart	heart
47	chr4:77919200-77922600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr4:77919200-77924400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:77919400-77922200	Strong transcription	K562	blood
50	chr4:77919600-77922400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell

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