Variant report

Variant	rs6534158
Chromosome Location	chr4:120768918-120768919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10030254	0.98[ASN][1000 genomes]
rs1027693	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1123767	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1124165	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1124166	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11940483	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11941391	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12513320	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13144947	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17006980	0.97[ASN][1000 genomes]
rs2089052	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2389924	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28709384	0.98[ASN][1000 genomes]
rs34900773	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35920721	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4240324	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4312743	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4461509	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4833630	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6819010	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6851091	0.99[ASN][1000 genomes]
rs722767	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7695614	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9714606	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9995950	0.99[ASN][1000 genomes]
rs9997455	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120758600-120794000	Weak transcription	Aorta	Aorta

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