Variant report

Variant	rs4240324
Chromosome Location	chr4:120780979-120780980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10030254	0.84[ASN][1000 genomes]
rs10032434	0.85[ASN][1000 genomes]
rs1027693	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1123767	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1124165	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1124166	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11940483	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11941391	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12513320	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13144947	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13149010	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17006980	0.83[ASN][1000 genomes]
rs2089052	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2202273	0.85[ASN][1000 genomes]
rs2389924	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28709384	0.84[ASN][1000 genomes]
rs34900773	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35920721	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4312743	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4461509	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4505807	0.85[ASN][1000 genomes]
rs4833630	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62319694	0.85[ASN][1000 genomes]
rs6534158	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6819871	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6851091	0.85[ASN][1000 genomes]
rs722767	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72910489	0.85[ASN][1000 genomes]
rs7695614	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9714606	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9995950	0.85[ASN][1000 genomes]
rs9997455	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3466105	chr4:120780662-120781177	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3492136	chr4:120780698-120781183	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3383211	chr4:120780703-120781153	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3492139	chr4:120780713-120781112	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3466107	chr4:120780714-120781148	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3466106	chr4:120780732-120781110	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3492138	chr4:120780741-120781118	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3466104	chr4:120780784-120781073	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3492137	chr4:120780795-120781071	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3466109	chr4:120780799-120781069	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3492140	chr4:120780799-120781069	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120758600-120794000	Weak transcription	Aorta	Aorta
2	chr4:120779600-120781000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:120780800-120781000	Enhancers	HUES48 Cell Line	embryonic stem cell

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