Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10030254	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1027693	0.84[ASN][1000 genomes]
rs1123767	0.98[ASN][1000 genomes]
rs1124165	0.98[ASN][1000 genomes]
rs1124166	0.98[ASN][1000 genomes]
rs11940483	1.00[ASN][1000 genomes]
rs11941391	1.00[ASN][1000 genomes]
rs12513320	0.98[ASN][1000 genomes]
rs13144947	0.98[ASN][1000 genomes]
rs13149010	0.80[CHB][hapmap]
rs17006980	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2089052	0.98[ASN][1000 genomes]
rs2389924	1.00[ASN][1000 genomes]
rs28709384	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34900773	0.87[ASN][1000 genomes]
rs4240324	0.85[ASN][1000 genomes]
rs4312743	1.00[ASN][1000 genomes]
rs4461509	1.00[ASN][1000 genomes]
rs4833630	0.97[ASN][1000 genomes]
rs62319694	0.83[EUR][1000 genomes]
rs6534158	0.99[ASN][1000 genomes]
rs6819010	0.85[ASN][1000 genomes]
rs6819871	0.84[CHB][hapmap]
rs722767	0.98[ASN][1000 genomes]
rs72910489	0.82[EUR][1000 genomes]
rs7695614	0.99[ASN][1000 genomes]
rs9714606	0.98[ASN][1000 genomes]
rs9995950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997455	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6851091	SYNPO2	cis	cerebellum	SCAN
rs6851091	PDE5A	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120758600-120794000	Weak transcription	Aorta	Aorta
2	chr4:120783000-120783200	Enhancers	Psoas Muscle	Psoas
3	chr4:120783000-120784000	Enhancers	Fetal Intestine Small	intestine
4	chr4:120783000-120784200	Enhancers	Fetal Intestine Large	intestine

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