Variant report
| Variant | rs6535657 |
|---|---|
| Chromosome Location | chr4:150043140-150043141 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:64)
| rs_ID | r2[population] |
|---|---|
| rs10003210 | 1.00[EUR][1000 genomes] |
| rs10005881 | 1.00[EUR][1000 genomes] |
| rs10006054 | 1.00[EUR][1000 genomes] |
| rs10010056 | 1.00[EUR][1000 genomes] |
| rs10012519 | 1.00[EUR][1000 genomes] |
| rs10014307 | 1.00[EUR][1000 genomes] |
| rs10028361 | 1.00[EUR][1000 genomes] |
| rs10031570 | 1.00[EUR][1000 genomes] |
| rs10155500 | 1.00[EUR][1000 genomes] |
| rs10155503 | 1.00[EUR][1000 genomes] |
| rs10222905 | 1.00[EUR][1000 genomes] |
| rs13434525 | 1.00[EUR][1000 genomes] |
| rs13435568 | 1.00[EUR][1000 genomes] |
| rs13435663 | 1.00[EUR][1000 genomes] |
| rs1371003 | 1.00[EUR][1000 genomes] |
| rs1371005 | 1.00[EUR][1000 genomes] |
| rs1438773 | 1.00[EUR][1000 genomes] |
| rs1438774 | 1.00[EUR][1000 genomes] |
| rs1438775 | 1.00[EUR][1000 genomes] |
| rs17025767 | 1.00[EUR][1000 genomes] |
| rs17025768 | 1.00[EUR][1000 genomes] |
| rs17025776 | 1.00[EUR][1000 genomes] |
| rs17025796 | 1.00[EUR][1000 genomes] |
| rs17025801 | 1.00[EUR][1000 genomes] |
| rs17025807 | 1.00[EUR][1000 genomes] |
| rs17025811 | 1.00[EUR][1000 genomes] |
| rs17025818 | 1.00[EUR][1000 genomes] |
| rs17839146 | 1.00[EUR][1000 genomes] |
| rs28378847 | 1.00[EUR][1000 genomes] |
| rs28410739 | 1.00[EUR][1000 genomes] |
| rs28413863 | 1.00[EUR][1000 genomes] |
| rs28552584 | 1.00[EUR][1000 genomes] |
| rs28579682 | 1.00[EUR][1000 genomes] |
| rs28579923 | 1.00[EUR][1000 genomes] |
| rs28635490 | 1.00[EUR][1000 genomes] |
| rs28640138 | 1.00[EUR][1000 genomes] |
| rs28654818 | 1.00[EUR][1000 genomes] |
| rs28679672 | 1.00[EUR][1000 genomes] |
| rs28701608 | 1.00[EUR][1000 genomes] |
| rs28716105 | 1.00[EUR][1000 genomes] |
| rs59690219 | 1.00[EUR][1000 genomes] |
| rs61133328 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61571330 | 1.00[EUR][1000 genomes] |
| rs6820337 | 1.00[EUR][1000 genomes] |
| rs6842217 | 1.00[EUR][1000 genomes] |
| rs6846044 | 1.00[EUR][1000 genomes] |
| rs6847532 | 1.00[EUR][1000 genomes] |
| rs72953611 | 1.00[EUR][1000 genomes] |
| rs72953613 | 1.00[EUR][1000 genomes] |
| rs72953615 | 1.00[EUR][1000 genomes] |
| rs72953627 | 1.00[EUR][1000 genomes] |
| rs72966027 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72966089 | 1.00[EUR][1000 genomes] |
| rs72966091 | 1.00[EUR][1000 genomes] |
| rs893559 | 1.00[EUR][1000 genomes] |
| rs9307853 | 1.00[EUR][1000 genomes] |
| rs972739 | 1.00[EUR][1000 genomes] |
| rs972740 | 1.00[EUR][1000 genomes] |
| rs974160 | 1.00[EUR][1000 genomes] |
| rs9990462 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9991846 | 1.00[EUR][1000 genomes] |
| rs9991901 | 1.00[EUR][1000 genomes] |
| rs9995385 | 1.00[EUR][1000 genomes] |
| rs9998024 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:150038400-150043200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr4:150041200-150044400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 3 | chr4:150042400-150043600 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 4 | chr4:150043000-150043800 | Enhancers | NHEK | skin |
| 5 | chr4:150043000-150044000 | Enhancers | Brain Germinal Matrix | brain |
