Variant report

Variant	rs59690219
Chromosome Location	chr4:150088917-150088918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10003210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10005881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006054	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10014307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10222905	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13434525	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13435568	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13435663	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1371003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438775	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025796	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025811	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17839146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28378847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410739	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28552584	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579682	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28635490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28679672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28716105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28723415	1.00[ASN][1000 genomes]
rs61133328	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61571330	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535657	1.00[EUR][1000 genomes]
rs6820337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951771	1.00[AMR][1000 genomes]
rs72951795	1.00[AMR][1000 genomes]
rs72951797	1.00[AMR][1000 genomes]
rs72953611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72962042	1.00[AMR][1000 genomes]
rs72963932	1.00[AMR][1000 genomes]
rs72966027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72966028	1.00[AMR][1000 genomes]
rs72966031	1.00[AMR][1000 genomes]
rs72966089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72966091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72966101	1.00[AMR][1000 genomes]
rs72967931	1.00[AMR][1000 genomes]
rs893559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972739	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990462	1.00[EUR][1000 genomes]
rs9991846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995385	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880247	chr4:150057979-150159936	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1022438	chr4:150066349-150196711	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv595687	chr4:150070596-150178533	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150083400-150092200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:150087800-150089200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:150088400-150089800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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