Variant report

Variant	rs9990462
Chromosome Location	chr4:150033377-150033378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:150033212..150035087-chr4:150035918..150038192,3	MCF-7	breast:

rs_ID	r²[population]
rs10003210	1.00[EUR][1000 genomes]
rs10005881	1.00[EUR][1000 genomes]
rs10006054	1.00[EUR][1000 genomes]
rs10010056	1.00[EUR][1000 genomes]
rs10012519	1.00[EUR][1000 genomes]
rs10014307	1.00[EUR][1000 genomes]
rs10028361	1.00[EUR][1000 genomes]
rs10031570	1.00[EUR][1000 genomes]
rs10155500	1.00[EUR][1000 genomes]
rs10155503	1.00[EUR][1000 genomes]
rs10222905	1.00[EUR][1000 genomes]
rs13434525	1.00[EUR][1000 genomes]
rs13435568	1.00[EUR][1000 genomes]
rs13435663	1.00[EUR][1000 genomes]
rs1371003	1.00[EUR][1000 genomes]
rs1371005	1.00[EUR][1000 genomes]
rs1438773	1.00[EUR][1000 genomes]
rs1438774	1.00[EUR][1000 genomes]
rs1438775	1.00[EUR][1000 genomes]
rs17025767	1.00[EUR][1000 genomes]
rs17025768	1.00[EUR][1000 genomes]
rs17025776	1.00[EUR][1000 genomes]
rs17025796	1.00[EUR][1000 genomes]
rs17025801	1.00[EUR][1000 genomes]
rs17025807	1.00[EUR][1000 genomes]
rs17025811	1.00[EUR][1000 genomes]
rs17025818	1.00[EUR][1000 genomes]
rs17839146	1.00[EUR][1000 genomes]
rs28378847	1.00[EUR][1000 genomes]
rs28410739	1.00[EUR][1000 genomes]
rs28413863	1.00[EUR][1000 genomes]
rs28552584	1.00[EUR][1000 genomes]
rs28579682	1.00[EUR][1000 genomes]
rs28579923	1.00[EUR][1000 genomes]
rs28635490	1.00[EUR][1000 genomes]
rs28640138	1.00[EUR][1000 genomes]
rs28654818	1.00[EUR][1000 genomes]
rs28679672	1.00[EUR][1000 genomes]
rs28701608	1.00[EUR][1000 genomes]
rs28716105	1.00[EUR][1000 genomes]
rs59690219	1.00[EUR][1000 genomes]
rs61133328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61571330	1.00[EUR][1000 genomes]
rs6535657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820337	1.00[EUR][1000 genomes]
rs6842217	1.00[EUR][1000 genomes]
rs6846044	1.00[EUR][1000 genomes]
rs6847532	1.00[EUR][1000 genomes]
rs72953611	1.00[EUR][1000 genomes]
rs72953613	1.00[EUR][1000 genomes]
rs72953615	1.00[EUR][1000 genomes]
rs72953627	1.00[EUR][1000 genomes]
rs72966027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72966089	1.00[EUR][1000 genomes]
rs72966091	1.00[EUR][1000 genomes]
rs893559	1.00[EUR][1000 genomes]
rs9307853	1.00[EUR][1000 genomes]
rs972739	1.00[EUR][1000 genomes]
rs972740	1.00[EUR][1000 genomes]
rs974160	1.00[EUR][1000 genomes]
rs9991846	1.00[EUR][1000 genomes]
rs9991901	1.00[EUR][1000 genomes]
rs9995385	1.00[EUR][1000 genomes]
rs9998024	1.00[EUR][1000 genomes]

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150025200-150034200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:150026600-150034200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:150030000-150034200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:150030000-150034800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:150032400-150034200	Weak transcription	NHDF-Ad	bronchial
6	chr4:150033200-150034400	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links