Variant report

Variant	rs72953666
Chromosome Location	chr4:150292257-150292258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:150291870..150292862-chr4:150818587..150819565,7	MCF-7	breast:
2	chr4:150291992..150292625-chr4:150817304..150817959,3	MCF-7	breast:
3	chr4:150292063..150292789-chr4:150470806..150471523,3	MCF-7	breast:
4	chr4:150291755..150292700-chr4:150817288..150818294,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234828	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10003210	1.00[EUR][1000 genomes]
rs10005881	1.00[EUR][1000 genomes]
rs10006054	1.00[EUR][1000 genomes]
rs10010056	1.00[EUR][1000 genomes]
rs10012519	1.00[EUR][1000 genomes]
rs10014307	1.00[EUR][1000 genomes]
rs10028361	1.00[EUR][1000 genomes]
rs10031570	1.00[EUR][1000 genomes]
rs10155500	1.00[EUR][1000 genomes]
rs10155503	1.00[EUR][1000 genomes]
rs10222905	1.00[EUR][1000 genomes]
rs13434525	1.00[EUR][1000 genomes]
rs13435568	1.00[EUR][1000 genomes]
rs13435663	1.00[EUR][1000 genomes]
rs1371003	1.00[EUR][1000 genomes]
rs1371005	1.00[EUR][1000 genomes]
rs1438773	1.00[EUR][1000 genomes]
rs1438774	1.00[EUR][1000 genomes]
rs1438775	1.00[EUR][1000 genomes]
rs17025767	1.00[EUR][1000 genomes]
rs17025768	1.00[EUR][1000 genomes]
rs17025776	1.00[EUR][1000 genomes]
rs17025796	1.00[EUR][1000 genomes]
rs17025801	1.00[EUR][1000 genomes]
rs17025807	1.00[EUR][1000 genomes]
rs17025811	1.00[EUR][1000 genomes]
rs17025818	1.00[EUR][1000 genomes]
rs17839146	1.00[EUR][1000 genomes]
rs28378847	1.00[EUR][1000 genomes]
rs28410739	1.00[EUR][1000 genomes]
rs28413863	1.00[EUR][1000 genomes]
rs28552584	1.00[EUR][1000 genomes]
rs28579682	1.00[EUR][1000 genomes]
rs28579923	1.00[EUR][1000 genomes]
rs28635490	1.00[EUR][1000 genomes]
rs28640138	1.00[EUR][1000 genomes]
rs28654818	1.00[EUR][1000 genomes]
rs28679672	1.00[EUR][1000 genomes]
rs28701608	1.00[EUR][1000 genomes]
rs28716105	1.00[EUR][1000 genomes]
rs4301085	1.00[AMR][1000 genomes]
rs4510455	1.00[AMR][1000 genomes]
rs59690219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61571330	1.00[EUR][1000 genomes]
rs6820337	1.00[EUR][1000 genomes]
rs6842217	1.00[EUR][1000 genomes]
rs6846044	1.00[EUR][1000 genomes]
rs6847532	1.00[EUR][1000 genomes]
rs72951771	1.00[AMR][1000 genomes]
rs72951795	1.00[AMR][1000 genomes]
rs72951797	1.00[AMR][1000 genomes]
rs72953611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953627	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72966089	1.00[EUR][1000 genomes]
rs72966091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72966101	1.00[AMR][1000 genomes]
rs72967931	1.00[AMR][1000 genomes]
rs893559	1.00[EUR][1000 genomes]
rs9307853	1.00[EUR][1000 genomes]
rs972739	1.00[EUR][1000 genomes]
rs972740	1.00[EUR][1000 genomes]
rs974160	1.00[EUR][1000 genomes]
rs9991846	1.00[EUR][1000 genomes]
rs9991901	1.00[EUR][1000 genomes]
rs9995385	1.00[EUR][1000 genomes]
rs9998024	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016977	chr4:150173255-150605595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537298	chr4:150173255-150605595	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150291200-150293000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links