Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10020770	0.80[AMR][1000 genomes]
rs10032251	0.83[AMR][1000 genomes]
rs11100255	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13104739	0.83[AMR][1000 genomes]
rs13150115	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1457815	0.80[AMR][1000 genomes]
rs1473392	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473393	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902829	0.80[AMR][1000 genomes]
rs1902830	0.80[AMR][1000 genomes]
rs1976456	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2088981	0.98[EUR][1000 genomes]
rs2088982	0.98[EUR][1000 genomes]
rs2088983	0.98[EUR][1000 genomes]
rs2348620	0.83[EUR][1000 genomes]
rs28493940	0.84[EUR][1000 genomes]
rs4280694	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61217796	0.83[EUR][1000 genomes]
rs62338507	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6848125	0.83[AMR][1000 genomes]
rs6848849	0.80[AMR][1000 genomes]
rs7667063	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690659	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7698008	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs868962	0.98[EUR][1000 genomes]
rs9991303	0.83[AMR][1000 genomes]
rs9993565	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv4574	chr4:160652259-160686024	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160656200-160658400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:160656400-160658000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:160656600-160658000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:160656600-160658200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:160656600-160658200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:160656800-160657800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:160656800-160658000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:160656800-160658000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:160656800-160658200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:160656800-160658200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:160657000-160669200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:160657600-160658800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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