Variant report
Variant | rs1902830 |
---|---|
Chromosome Location | chr4:160668964-160668965 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10020770 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10032251 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11100261 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs13104739 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13150115 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1457815 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1473392 | 0.89[AMR][1000 genomes] |
rs1473393 | 0.89[AMR][1000 genomes] |
rs1902829 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1976456 | 0.86[AMR][1000 genomes] |
rs2125164 | 0.84[AFR][1000 genomes] |
rs2125165 | 0.85[AFR][1000 genomes] |
rs4280694 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs4293753 | 0.85[AFR][1000 genomes] |
rs4484248 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4691605 | 0.86[AFR][1000 genomes] |
rs6536465 | 0.80[AMR][1000 genomes] |
rs6814547 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6848125 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6848849 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7663113 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7667063 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7671117 | 0.80[AFR][1000 genomes] |
rs7690659 | 0.86[AMR][1000 genomes] |
rs7698008 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9991303 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9993565 | 0.86[AMR][1000 genomes] |
rs9995111 | 0.84[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1015469 | chr4:160389277-160841619 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv537316 | chr4:160389277-160841619 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv4574 | chr4:160652259-160686024 | Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | esv3410478 | chr4:160667252-160669350 | Enhancers ZNF genes & repeats Genic enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
5 | esv3421220 | chr4:160667602-160669050 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:160657000-160669200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
2 | chr4:160666600-160685400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
3 | chr4:160668800-160669200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |