Variant report

Variant	rs6814547
Chromosome Location	chr4:160700736-160700737
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10020770	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10032251	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11100261	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13104739	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1457815	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1902829	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1902830	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2014089	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4484248	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6848125	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6848849	0.83[EUR][1000 genomes]
rs7663113	0.81[ASN][1000 genomes]
rs9685442	0.90[YRI][hapmap]
rs9991303	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880358	chr4:160694415-161575183	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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