Variant report

Variant	rs7663113
Chromosome Location	chr4:160673472-160673473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10020770	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10032251	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11100261	0.85[ASN][1000 genomes]
rs13104739	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13150115	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1457815	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1473392	0.80[AMR][1000 genomes]
rs1473393	0.80[AMR][1000 genomes]
rs1902829	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1902830	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4484248	0.86[ASN][1000 genomes]
rs62338538	1.00[EUR][1000 genomes]
rs62339768	1.00[EUR][1000 genomes]
rs6814547	0.81[ASN][1000 genomes]
rs6848125	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6848849	0.96[ASN][1000 genomes]
rs7698008	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9991303	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv4574	chr4:160652259-160686024	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7663113	GRIA2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160666600-160685400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:160669600-160676400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:160669800-160673600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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