Variant report

Variant	rs4484248
Chromosome Location	chr4:160687375-160687376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10020770	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10032251	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11100261	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13104739	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13150115	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1379609	0.81[EUR][1000 genomes]
rs1457815	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1902829	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1902830	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2014089	0.81[EUR][1000 genomes]
rs62338538	0.80[ASN][1000 genomes]
rs62339768	0.80[ASN][1000 genomes]
rs6814547	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6848125	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6848849	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7663113	0.86[ASN][1000 genomes]
rs7698008	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9991303	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160685200-160687400	Enhancers	HSMM	muscle
2	chr4:160685200-160687600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:160685200-160689800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:160685400-160689600	Enhancers	NH-A	brain
5	chr4:160686000-160691800	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:160686200-160692200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:160686400-160687400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:160687200-160687600	Enhancers	Fetal Brain Male	brain
9	chr4:160687200-160688000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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