Variant report

Variant	rs653773
Chromosome Location	chr9:27094647-27094648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1161603	0.83[MKK][hapmap]
rs16911095	1.00[EUR][1000 genomes]
rs1762074	1.00[EUR][1000 genomes]
rs2782414	1.00[EUR][1000 genomes]
rs2782417	1.00[EUR][1000 genomes]
rs2782418	1.00[EUR][1000 genomes]
rs2782429	1.00[EUR][1000 genomes]
rs2782431	1.00[EUR][1000 genomes]
rs482271	1.00[EUR][1000 genomes]
rs529941	1.00[EUR][1000 genomes]
rs581470	1.00[EUR][1000 genomes]
rs596496	1.00[EUR][1000 genomes]
rs602255	1.00[EUR][1000 genomes]
rs610646	1.00[EUR][1000 genomes]
rs613009	1.00[EUR][1000 genomes]
rs615316	1.00[EUR][1000 genomes]
rs615636	1.00[EUR][1000 genomes]
rs629138	1.00[EUR][1000 genomes]
rs629582	1.00[EUR][1000 genomes]
rs672470	1.00[EUR][1000 genomes]
rs674459	1.00[EUR][1000 genomes]
rs7390769	1.00[EUR][1000 genomes]
rs7390770	1.00[EUR][1000 genomes]
rs7390781	1.00[EUR][1000 genomes]
rs7390786	1.00[EUR][1000 genomes]
rs7390795	1.00[EUR][1000 genomes]
rs7390806	1.00[EUR][1000 genomes]
rs7390815	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27024800-27094800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:27091600-27095800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:27093800-27095000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:27093800-27095200	Enhancers	HSMMtube	muscle
5	chr9:27093800-27095600	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:27093800-27095800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:27094000-27095000	Enhancers	Fetal Kidney	kidney
8	chr9:27094000-27095200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:27094000-27095400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:27094000-27095800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:27094000-27095800	Enhancers	HSMM	muscle
12	chr9:27094000-27096400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:27094200-27094800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:27094200-27095000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:27094200-27095000	Enhancers	Hela-S3	cervix
16	chr9:27094200-27095400	Enhancers	NHEK	skin
17	chr9:27094200-27095600	Enhancers	HUVEC	blood vessel
18	chr9:27094400-27094800	Flanking Active TSS	Osteobl	bone
19	chr9:27094400-27095000	Enhancers	Fetal Lung	lung
20	chr9:27094400-27095200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:27094400-27095200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:27094400-27095600	Enhancers	NHDF-Ad	bronchial
23	chr9:27094400-27096400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:27094600-27095000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:27094600-27095000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:27094600-27095000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:27094600-27095000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:27094600-27095000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr9:27094600-27095000	Enhancers	Fetal Muscle Leg	muscle
30	chr9:27094600-27095000	Flanking Active TSS	NH-A	brain
31	chr9:27094600-27095200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:27094600-27095200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:27094600-27095200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr9:27094600-27095200	Enhancers	HMEC	breast
35	chr9:27094600-27095400	Enhancers	NHLF	lung

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