Variant report

Variant	rs672470
Chromosome Location	chr9:27092742-27092743
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1034295	0.82[YRI][hapmap]
rs10812512	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1336338	0.82[YRI][hapmap]
rs16911095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1762074	1.00[EUR][1000 genomes]
rs2782414	1.00[EUR][1000 genomes]
rs2782415	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2782417	1.00[EUR][1000 genomes]
rs2782418	1.00[EUR][1000 genomes]
rs2782429	1.00[EUR][1000 genomes]
rs2782431	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs482271	1.00[EUR][1000 genomes]
rs4993020	0.80[YRI][hapmap]
rs529941	1.00[EUR][1000 genomes]
rs581470	1.00[EUR][1000 genomes]
rs596496	1.00[EUR][1000 genomes]
rs602255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs610646	1.00[EUR][1000 genomes]
rs613009	1.00[EUR][1000 genomes]
rs615316	1.00[EUR][1000 genomes]
rs615636	1.00[EUR][1000 genomes]
rs629138	1.00[EUR][1000 genomes]
rs629582	1.00[EUR][1000 genomes]
rs653773	1.00[EUR][1000 genomes]
rs674459	1.00[EUR][1000 genomes]
rs7038314	0.89[YRI][hapmap]
rs7390769	1.00[EUR][1000 genomes]
rs7390770	1.00[EUR][1000 genomes]
rs7390781	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7390786	1.00[EUR][1000 genomes]
rs7390795	1.00[EUR][1000 genomes]
rs7390806	1.00[EUR][1000 genomes]
rs7390815	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27024800-27094800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:27089600-27094000	Weak transcription	Fetal Kidney	kidney
3	chr9:27090200-27094000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:27090200-27094000	Weak transcription	NH-A	brain
5	chr9:27090600-27093800	Weak transcription	HSMMtube	muscle
6	chr9:27090600-27094000	Weak transcription	HSMM	muscle
7	chr9:27090800-27094000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:27090800-27094600	Weak transcription	NHLF	lung
9	chr9:27091000-27093800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:27091400-27093800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:27091600-27095800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:27092000-27093800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:27092200-27093800	Weak transcription	Osteobl	bone
14	chr9:27092200-27094000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:27092600-27094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:27092600-27094600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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