Variant report

Variant	rs7390795
Chromosome Location	chr9:27111441-27111442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16911095	1.00[EUR][1000 genomes]
rs1762074	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2782414	1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2782417	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2782418	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2782429	0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2782431	1.00[EUR][1000 genomes]
rs482271	1.00[EUR][1000 genomes]
rs529941	1.00[EUR][1000 genomes]
rs581470	1.00[EUR][1000 genomes]
rs596496	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs602255	1.00[EUR][1000 genomes]
rs610646	1.00[EUR][1000 genomes]
rs613009	1.00[EUR][1000 genomes]
rs615316	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs615636	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs615908	0.94[AFR][1000 genomes]
rs629138	1.00[EUR][1000 genomes]
rs629582	1.00[EUR][1000 genomes]
rs653773	1.00[EUR][1000 genomes]
rs672470	1.00[EUR][1000 genomes]
rs674459	1.00[EUR][1000 genomes]
rs7390769	0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7390770	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7390781	1.00[EUR][1000 genomes]
rs7390786	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7390806	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7390815	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27108800-27111600	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr9:27108800-27111800	Active TSS	Right Atrium	heart
3	chr9:27108800-27112000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:27109000-27111600	Active TSS	Fetal Intestine Small	intestine
5	chr9:27109000-27111600	Active TSS	Psoas Muscle	Psoas
6	chr9:27109000-27111600	Active TSS	Right Ventricle	heart
7	chr9:27109000-27111800	Active TSS	Fetal Kidney	kidney
8	chr9:27109000-27112200	Active TSS	Left Ventricle	heart
9	chr9:27109000-27112200	Active TSS	Lung	lung
10	chr9:27109000-27112600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
11	chr9:27109600-27112400	Active TSS	Adipose Nuclei	Adipose
12	chr9:27109600-27117600	Weak transcription	HSMMtube	muscle
13	chr9:27109600-27117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:27109800-27111600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:27109800-27111600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:27109800-27117600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr9:27110400-27122000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:27110400-27123200	Weak transcription	Fetal Lung	lung
19	chr9:27110600-27117600	Weak transcription	Ovary	ovary
20	chr9:27111000-27111600	Active TSS	Brain Substantia Nigra	brain
21	chr9:27111000-27111800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:27111000-27112000	Flanking Active TSS	HUVEC	blood vessel
23	chr9:27111200-27111600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:27111200-27111600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:27111200-27111600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:27111200-27111600	Enhancers	Placenta Amnion	Placenta Amnion
27	chr9:27111200-27111600	Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr9:27111200-27111600	Flanking Active TSS	NH-A	brain
29	chr9:27111200-27111800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr9:27111200-27111800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:27111200-27111800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr9:27111200-27122000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:27111400-27111600	Active TSS	Fetal Muscle Leg	muscle
34	chr9:27111400-27111600	Enhancers	Osteobl	bone
35	chr9:27111400-27111800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:27111400-27117400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:27111400-27117600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr9:27111400-27124200	Weak transcription	Colon Smooth Muscle	Colon

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