Variant report

Variant rs6540942
Chromosome Location chr1:10737932-10737933
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10698800-10752000 Weak transcription Primary T helper cells fromperipheralblood blood
2 chr1:10722800-10753000 Weak transcription Primary T cells from cord blood blood
3 chr1:10724200-10743200 Enhancers Fetal Heart heart
4 chr1:10725600-10739200 Weak transcription Thymus Thymus
5 chr1:10726400-10741600 Weak transcription Brain Hippocampus Middle brain
6 chr1:10726400-10750000 Weak transcription Primary B cells from peripheral blood blood
7 chr1:10729000-10739400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:10729000-10739400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr1:10730400-10752000 Genic enhancers Fetal Intestine Small intestine
10 chr1:10731400-10744000 Enhancers Rectal Mucosa Donor 31 rectum
11 chr1:10731600-10743200 Weak transcription Small Intestine intestine
12 chr1:10731800-10748400 Weak transcription Primary B cells from cord blood blood
13 chr1:10732000-10739400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:10732200-10739800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr1:10733400-10738400 Enhancers Left Ventricle heart
16 chr1:10733400-10742400 Enhancers Right Ventricle heart
17 chr1:10733600-10741600 Enhancers Skeletal Muscle Female skeletal muscle
18 chr1:10733800-10738400 Enhancers Pancreas Pancrea
19 chr1:10733800-10738400 Enhancers Rectal Mucosa Donor 29 rectum
20 chr1:10733800-10739600 Enhancers Duodenum Smooth Muscle Duodenum
21 chr1:10733800-10742400 Enhancers Skeletal Muscle Male skeletal muscle
22 chr1:10734200-10747800 Enhancers Fetal Intestine Large intestine
23 chr1:10734600-10739000 Enhancers Sigmoid Colon Sigmoid Colon
24 chr1:10734800-10738600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:10735000-10740600 Weak transcription Aorta Aorta
26 chr1:10735000-10751600 Enhancers Lung lung
27 chr1:10735200-10738200 Enhancers Breast Myoepithelial Primary Cells Breast
28 chr1:10735200-10738200 Enhancers Fetal Adrenal Gland Adrenal Gland
29 chr1:10735200-10743400 Enhancers Placenta Placenta
30 chr1:10735400-10741600 Bivalent Enhancer Fetal Muscle Trunk muscle
31 chr1:10735600-10738200 Enhancers Right Atrium heart
32 chr1:10735800-10740800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr1:10736000-10743800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
34 chr1:10736000-10751600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr1:10736200-10744200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:10736400-10738200 Enhancers ES-I3 Cell Line embryonic stem cell
37 chr1:10736400-10738400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
38 chr1:10736400-10743600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
39 chr1:10736600-10738000 Genic enhancers Esophagus oesophagus
40 chr1:10736600-10738200 Flanking Active TSS Stomach Smooth Muscle stomach
41 chr1:10736600-10739800 Enhancers HUES48 Cell Line embryonic stem cell
42 chr1:10736600-10740000 Enhancers ES-WA7 Cell Line embryonic stem cell
43 chr1:10736600-10741200 Enhancers Fetal Muscle Leg muscle
44 chr1:10736600-10744200 Enhancers HUES6 Cell Line embryonic stem cell
45 chr1:10736800-10740200 Enhancers iPS-18 Cell Line embryonic stem cell
46 chr1:10736800-10740200 Enhancers Fetal Lung lung
47 chr1:10736800-10740600 Enhancers H1 Cell Line embryonic stem cell
48 chr1:10737000-10738000 Flanking Active TSS Duodenum Mucosa Duodenum
49 chr1:10737000-10738200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
50 chr1:10737000-10738600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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