Variant report

Variant	rs6546273
Chromosome Location	chr2:67158316-67158317
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1121247	0.98[EUR][1000 genomes]
rs1362477	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1420366	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17032776	0.83[EUR][1000 genomes]
rs2861183	0.80[ASN][1000 genomes]
rs59812251	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6725675	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6746213	0.83[ASN][1000 genomes]
rs7573989	0.97[EUR][1000 genomes]
rs7574079	0.97[EUR][1000 genomes]
rs7587400	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67156600-67158400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:67156800-67158400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:67156800-67158600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:67156800-67158800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:67156800-67159200	Enhancers	Ovary	ovary
6	chr2:67157000-67158400	Enhancers	Fetal Lung	lung
7	chr2:67157000-67159000	Enhancers	Fetal Kidney	kidney
8	chr2:67157200-67158400	Enhancers	Primary hematopoietic stem cells	blood
9	chr2:67157800-67158400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:67157800-67159000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:67158200-67158400	Enhancers	Colon Smooth Muscle	Colon
12	chr2:67158200-67164000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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