Variant report

Variant	rs6725675
Chromosome Location	chr2:67156096-67156097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1121247	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1362477	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1420366	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17032776	0.83[EUR][1000 genomes]
rs59812251	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6546273	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7573989	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7574079	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7587400	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67145400-67156600	Weak transcription	Fetal Heart	heart
2	chr2:67152600-67156800	Weak transcription	Ovary	ovary
3	chr2:67152600-67157000	Weak transcription	Hela-S3	cervix
4	chr2:67152600-67157000	Weak transcription	NHDF-Ad	bronchial
5	chr2:67152800-67157000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:67152800-67157000	Weak transcription	Pancreas	Pancrea
7	chr2:67153000-67157000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:67153200-67157200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:67153400-67156200	Weak transcription	HMEC	breast
10	chr2:67153400-67156400	Weak transcription	NHEK	skin
11	chr2:67153600-67156800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:67154600-67156800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr2:67155600-67156200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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