Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1027197	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1027198	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1387871	0.83[ASN][1000 genomes]
rs1490267	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1490273	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17046165	0.93[ASN][1000 genomes]
rs17046214	0.83[ASN][1000 genomes]
rs17046220	0.83[ASN][1000 genomes]
rs1994611	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2171932	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2363710	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57388155	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59118239	0.83[ASN][1000 genomes]
rs59809779	0.83[ASN][1000 genomes]
rs60400002	0.83[ASN][1000 genomes]
rs62254720	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62254721	0.93[ASN][1000 genomes]
rs62254722	0.93[ASN][1000 genomes]
rs62254725	0.83[ASN][1000 genomes]
rs62254728	0.83[ASN][1000 genomes]
rs62254730	0.83[ASN][1000 genomes]
rs62254743	0.83[ASN][1000 genomes]
rs62254744	0.83[ASN][1000 genomes]
rs62254745	0.83[ASN][1000 genomes]
rs62254746	0.83[ASN][1000 genomes]
rs62254747	0.83[ASN][1000 genomes]
rs62254749	0.83[ASN][1000 genomes]
rs6787783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67335200-67341000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:67338800-67344000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:67339800-67342600	Enhancers	HSMMtube	muscle
4	chr3:67340000-67340800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:67340200-67340800	Weak transcription	Fetal Brain Male	brain
6	chr3:67340200-67341000	Enhancers	Aorta	Aorta
7	chr3:67340200-67341200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:67340200-67342600	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:67340400-67340800	Enhancers	Stomach Mucosa	stomach
10	chr3:67340400-67341000	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:67340400-67341600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:67340400-67342800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:67340600-67340800	Enhancers	Psoas Muscle	Psoas
14	chr3:67340600-67341000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr3:67340600-67341600	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:67340600-67341600	Enhancers	Placenta	Placenta

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