Variant report

Variant	rs1490267
Chromosome Location	chr3:67363888-67363889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1027196	0.88[CEU][hapmap]
rs1027197	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1027198	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1387871	1.00[JPT][hapmap]
rs1490273	0.94[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17046165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17046214	1.00[ASN][1000 genomes]
rs17046220	1.00[ASN][1000 genomes]
rs1994611	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363710	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57388155	0.83[ASN][1000 genomes]
rs59118239	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59809779	1.00[ASN][1000 genomes]
rs60400002	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62254720	0.87[ASN][1000 genomes]
rs62254721	0.87[ASN][1000 genomes]
rs62254722	0.87[ASN][1000 genomes]
rs62254725	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62254728	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62254730	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62254743	1.00[ASN][1000 genomes]
rs62254744	1.00[ASN][1000 genomes]
rs62254745	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62254746	1.00[ASN][1000 genomes]
rs62254747	1.00[ASN][1000 genomes]
rs62254749	1.00[ASN][1000 genomes]
rs6548443	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6787783	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9309753	0.88[CEU][hapmap]
rs9838079	0.86[CEU][hapmap]
rs9843377	0.88[CEU][hapmap]
rs9856163	0.87[CEU][hapmap]
rs9860348	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67362400-67367400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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