Variant report

Variant	rs9856163
Chromosome Location	chr3:67346041-67346042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr3:67345958-67347259	HepG2	liver:	n/a	chr3:67346606-67346614
2	BCL3	chr3:67345937-67346169	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000241884	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1027196	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11705924	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11706477	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11710648	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11719613	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1490264	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1490266	0.89[EUR][1000 genomes]
rs1490272	0.93[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1490273	0.93[CEU][hapmap];0.84[TSI][hapmap]
rs1552617	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1552618	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1552624	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1552630	0.87[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17806805	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2363706	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3206427	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3206428	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4856845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6548450	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6782456	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6787783	0.93[CEU][hapmap]
rs7433795	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7639918	0.85[EUR][1000 genomes]
rs7647117	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7648649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7649144	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs902327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9309753	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs971316	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs973817	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9831805	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9838079	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9843377	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9860348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9863572	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67340800-67347200	Enhancers	HepG2	liver
2	chr3:67343000-67352200	Weak transcription	Aorta	Aorta
3	chr3:67343800-67346400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:67346000-67346800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:67346000-67346800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:67346000-67347200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:67346000-67347200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:67346000-67347200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:67346000-67347400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:67346000-67350200	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links