Variant report

Variant	rs9863572
Chromosome Location	chr3:67355643-67355644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KBTBD8-1	chr3:67354804-67356783	XLOC_002691

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1027196	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11705924	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11706477	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11710648	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11719613	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1490264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1490266	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1490272	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1490273	0.93[CEU][hapmap]
rs1552617	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1552618	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1552624	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1552630	0.87[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17806805	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2363706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3206427	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3206428	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4856845	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6548450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6782456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787783	0.93[CEU][hapmap]
rs7433795	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7639918	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7647117	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7648649	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7649144	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs902327	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9309753	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs971316	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs973817	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9831805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9838079	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9843377	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9856163	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9860348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67347200-67355800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:67347600-67362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:67350600-67355800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:67353400-67356000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:67353400-67356200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:67355000-67357200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:67355200-67357400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:67355400-67356600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:67355600-67355800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:67355600-67356800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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