Variant report

Variant	rs1490266
Chromosome Location	chr3:67365479-67365480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1027196	0.89[EUR][1000 genomes]
rs11705924	0.85[EUR][1000 genomes]
rs11706477	0.85[EUR][1000 genomes]
rs11710648	0.87[EUR][1000 genomes]
rs11719613	0.87[EUR][1000 genomes]
rs1490264	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1490272	0.89[EUR][1000 genomes]
rs1552617	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1552618	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1552624	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1552630	0.89[EUR][1000 genomes]
rs17806805	0.87[EUR][1000 genomes]
rs2363706	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3206427	0.84[EUR][1000 genomes]
rs3206428	0.84[EUR][1000 genomes]
rs4856845	0.86[EUR][1000 genomes]
rs61317274	1.00[ASN][1000 genomes]
rs6548450	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6782456	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7433795	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7639918	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7647117	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7648649	0.89[EUR][1000 genomes]
rs7649144	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs902327	0.89[EUR][1000 genomes]
rs9309753	0.89[EUR][1000 genomes]
rs971316	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs973817	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9831805	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9838079	0.89[EUR][1000 genomes]
rs9843377	0.87[EUR][1000 genomes]
rs9856163	0.89[EUR][1000 genomes]
rs9860348	0.89[EUR][1000 genomes]
rs9863572	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67362400-67367400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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