Variant report

Variant	rs7639918
Chromosome Location	chr3:67386369-67386370
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1027196	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11705924	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11706477	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11710648	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11719613	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1490264	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1490266	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1490272	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs1490273	0.93[CEU][hapmap]
rs1552617	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1552618	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1552624	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1552630	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs17806805	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2363706	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3206427	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3206428	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4856845	0.83[EUR][1000 genomes]
rs6548450	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6782456	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6787783	0.93[CEU][hapmap]
rs7433795	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7647117	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7648649	0.85[EUR][1000 genomes]
rs7649144	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs902327	0.85[EUR][1000 genomes]
rs9309753	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs971316	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs973817	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9831805	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9838079	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9843377	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9856163	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs9860348	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs9863572	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67386200-67386800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:67386200-67386800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:67386200-67386800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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