Variant report

Variant	rs1552618
Chromosome Location	chr3:67400491-67400492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1027196	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11705924	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11706477	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11710648	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11719613	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13091433	0.81[EUR][1000 genomes]
rs1490264	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1490266	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1490272	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1490273	0.86[CEU][hapmap]
rs1552617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552624	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1552630	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17046321	0.81[EUR][1000 genomes]
rs17806805	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2363706	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3206427	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3206428	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4856845	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs59619050	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6548450	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6782456	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6787783	0.86[CEU][hapmap]
rs7433795	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7639918	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7647117	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7648649	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7649144	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs902327	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9309753	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs971316	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs973817	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9831805	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9838079	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9843377	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9856163	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9860348	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9863572	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv834719	chr3:67396626-67589852	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67399800-67400600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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