Variant report

Variant	rs9831805
Chromosome Location	chr3:67360637-67360638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1027196	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11705924	0.88[EUR][1000 genomes]
rs11706477	0.88[EUR][1000 genomes]
rs11710648	0.90[EUR][1000 genomes]
rs11719613	0.90[EUR][1000 genomes]
rs1490264	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1490266	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1490272	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1552617	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1552618	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1552624	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1552630	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17806805	0.90[EUR][1000 genomes]
rs2363706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3206427	0.87[EUR][1000 genomes]
rs3206428	0.87[EUR][1000 genomes]
rs4856845	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6548450	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6782456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7433795	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7639918	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7647117	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7648649	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7649144	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs902327	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9309753	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs971316	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs973817	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9838079	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9843377	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9856163	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9860348	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9863572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67347600-67362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:67356600-67361400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:67356600-67361800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:67356600-67362000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:67356800-67361600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:67356800-67361600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:67359800-67361200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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