Variant report

Variant	rs17806805
Chromosome Location	chr3:67415904-67415905
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1027196	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11705924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11710648	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11715724	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11719613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091433	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1490264	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1490266	0.87[EUR][1000 genomes]
rs1490272	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1490273	0.87[CEU][hapmap]
rs1552617	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1552618	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1552624	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1552630	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17046321	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2363706	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3206427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3206428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4856845	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs59619050	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59624407	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6548450	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6782456	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6787783	0.87[CEU][hapmap]
rs7433795	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7639918	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7647117	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7648649	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7649144	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs902327	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9309753	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs971316	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs973817	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9831805	0.90[EUR][1000 genomes]
rs9838079	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9843377	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9856163	1.00[ASW][hapmap];0.93[CEU][hapmap];0.91[MKK][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9860348	1.00[ASW][hapmap];0.93[CEU][hapmap];0.91[MKK][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9863572	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv834719	chr3:67396626-67589852	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67412400-67453000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:67412600-67417000	Weak transcription	Aorta	Aorta
3	chr3:67413200-67419800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:67413200-67441800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:67414200-67438800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:67414400-67419400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:67414400-67426200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:67414400-67470800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:67414600-67419000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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