Variant report

Variant	rs6787783
Chromosome Location	chr3:67341901-67341902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr3:67341736-67342042	HepG2	liver:	n/a	chr3:67341975-67341987
2	HDAC2	chr3:67341741-67342102	HepG2	liver:	n/a	n/a
3	EP300	chr3:67341635-67342084	HepG2	liver:	n/a	n/a
4	HNF4A	chr3:67341744-67342057	HepG2	liver:	n/a	chr3:67341975-67341987
5	FOXA2	chr3:67341730-67342043	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000241884	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1027196	0.93[CEU][hapmap]
rs1027197	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1027198	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1387871	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1490267	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1490272	0.86[CEU][hapmap]
rs1490273	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1552630	0.81[CEU][hapmap]
rs17046165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs17046214	0.83[ASN][1000 genomes]
rs17046220	0.83[ASN][1000 genomes]
rs1994611	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2171932	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2363710	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57388155	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59118239	0.83[ASN][1000 genomes]
rs59809779	0.83[ASN][1000 genomes]
rs60400002	0.83[ASN][1000 genomes]
rs62254720	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62254721	0.93[ASN][1000 genomes]
rs62254722	0.93[ASN][1000 genomes]
rs62254725	0.83[ASN][1000 genomes]
rs62254728	0.83[ASN][1000 genomes]
rs62254730	0.83[ASN][1000 genomes]
rs62254743	0.83[ASN][1000 genomes]
rs62254744	0.83[ASN][1000 genomes]
rs62254745	0.83[ASN][1000 genomes]
rs62254746	0.83[ASN][1000 genomes]
rs62254747	0.83[ASN][1000 genomes]
rs62254749	0.83[ASN][1000 genomes]
rs6548443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309753	0.93[CEU][hapmap]
rs9838079	0.93[CEU][hapmap]
rs9843377	0.93[CEU][hapmap]
rs9856163	0.93[CEU][hapmap]
rs9860348	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67338800-67344000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:67339800-67342600	Enhancers	HSMMtube	muscle
3	chr3:67340200-67342600	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:67340400-67342800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:67340800-67342200	Weak transcription	Stomach Mucosa	stomach
6	chr3:67340800-67347200	Enhancers	HepG2	liver
7	chr3:67341000-67342400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:67341000-67342600	Weak transcription	Aorta	Aorta
9	chr3:67341200-67342200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:67341200-67342800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:67341200-67342800	Enhancers	GM12878-XiMat	blood
12	chr3:67341600-67342600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:67341600-67342800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:67341600-67342800	Weak transcription	Placenta	Placenta

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