Variant report

Variant	rs6548617
Chromosome Location	chr3:79418230-79418231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11915116	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919183	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920736	1.00[JPT][hapmap]
rs11921385	1.00[JPT][hapmap]
rs11923954	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926475	1.00[JPT][hapmap]
rs11927377	1.00[JPT][hapmap]
rs17016897	1.00[JPT][hapmap]
rs17016903	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016904	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17395825	1.00[JPT][hapmap]
rs4362686	1.00[JPT][hapmap]
rs6772979	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803667	1.00[JPT][hapmap]
rs7611676	1.00[JPT][hapmap]
rs7618349	1.00[JPT][hapmap]
rs7622139	1.00[JPT][hapmap]
rs7623349	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870375	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79415400-79418600	Enhancers	HMEC	breast
2	chr3:79415600-79418600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:79415600-79418600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:79415600-79418800	Enhancers	NHEK	skin
5	chr3:79415800-79418600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:79416000-79418400	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:79416400-79418600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:79417200-79418400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:79417400-79418400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:79417400-79418600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:79417600-79418400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:79417600-79418400	Enhancers	Fetal Brain Female	brain
13	chr3:79417600-79418600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:79417600-79418600	Enhancers	Fetal Brain Male	brain
15	chr3:79417600-79418800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr3:79417600-79418800	Enhancers	Fetal Lung	lung
17	chr3:79417800-79418400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr3:79417800-79418600	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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