Variant report

Variant	rs6772979
Chromosome Location	chr3:79516319-79516320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11915116	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916241	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11919125	1.00[CEU][hapmap]
rs11919183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920736	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11921385	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11923954	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926475	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11927377	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17016854	1.00[AMR][1000 genomes]
rs17016855	1.00[AMR][1000 genomes]
rs17016897	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17016903	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016904	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17395825	1.00[JPT][hapmap]
rs4362686	1.00[JPT][hapmap]
rs6548617	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803667	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7611676	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7618349	1.00[JPT][hapmap]
rs7622139	1.00[JPT][hapmap]
rs7623349	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870375	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381015	chr3:79425678-79545174	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv998248	chr3:79426615-79554963	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834747	chr3:79441211-79591923	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79516000-79516600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:79516000-79517600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:79516200-79516600	Enhancers	NHEK	skin
4	chr3:79516200-79516800	Enhancers	HMEC	breast

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