Variant report

Variant	rs6549189
Chromosome Location	chr3:69271206-69271207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4241386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4645139	1.00[AMR][1000 genomes]
rs4855367	0.88[AFR][1000 genomes]
rs6764830	0.86[AFR][1000 genomes]
rs6777899	1.00[AMR][1000 genomes]
rs6798530	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7619197	1.00[AMR][1000 genomes]
rs7639320	1.00[AMR][1000 genomes]
rs7643175	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9835163	0.91[AFR][1000 genomes]
rs9848630	1.00[AMR][1000 genomes]
rs9848940	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398378	chr3:69240573-69271936	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:69250000-69272400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:69250000-69281600	Weak transcription	Esophagus	oesophagus
5	chr3:69250200-69286000	Weak transcription	Colonic Mucosa	Colon
6	chr3:69250400-69280000	Weak transcription	Fetal Kidney	kidney
7	chr3:69253000-69297600	Weak transcription	Gastric	stomach
8	chr3:69253400-69277400	Weak transcription	Left Ventricle	heart
9	chr3:69254000-69280800	Weak transcription	Pancreas	Pancrea
10	chr3:69254000-69286000	Weak transcription	Right Ventricle	heart
11	chr3:69254600-69299000	Weak transcription	Fetal Brain Male	brain
12	chr3:69260000-69285800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:69261000-69272800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:69261000-69280400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:69262200-69274200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:69262400-69276000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:69262600-69286200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:69263000-69273800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:69263000-69274200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr3:69263200-69274000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:69263200-69274200	Strong transcription	Dnd41	blood
22	chr3:69263200-69274400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:69263400-69275000	Weak transcription	Stomach Mucosa	stomach
24	chr3:69263600-69273800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr3:69263600-69275000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:69263800-69275600	Weak transcription	Brain Angular Gyrus	brain
27	chr3:69263800-69275600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr3:69263800-69281000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:69264000-69275000	Weak transcription	Aorta	Aorta
30	chr3:69264600-69275600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:69265200-69272400	Weak transcription	Fetal Intestine Small	intestine
32	chr3:69265200-69280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:69265600-69277400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:69266800-69281800	Weak transcription	Lung	lung
35	chr3:69267000-69273800	Strong transcription	Liver	Liver
36	chr3:69267200-69273800	Strong transcription	Fetal Lung	lung
37	chr3:69268000-69280000	Weak transcription	Placenta	Placenta
38	chr3:69268400-69271600	Strong transcription	Fetal Brain Female	brain
39	chr3:69268400-69273200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:69268600-69274000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:69268800-69271600	Strong transcription	Fetal Intestine Large	intestine
42	chr3:69268800-69271800	Strong transcription	Brain Hippocampus Middle	brain
43	chr3:69268800-69272600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr3:69269000-69286000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:69269000-69287600	Weak transcription	Spleen	Spleen
46	chr3:69269000-69301400	Weak transcription	HMEC	breast
47	chr3:69269200-69271600	Strong transcription	Thymus	Thymus
48	chr3:69269200-69273000	Strong transcription	Fetal Thymus	thymus
49	chr3:69269600-69273800	Strong transcription	HUVEC	blood vessel
50	chr3:69269800-69275200	Weak transcription	Brain Substantia Nigra	brain

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