Variant report

Variant	rs9835163
Chromosome Location	chr3:69273302-69273303
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69271768..69274528-chr3:69280335..69282349,2	MCF-7	breast:

rs_ID	r²[population]
rs4241386	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs4855367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6549189	0.91[AFR][1000 genomes]
rs6773288	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798530	0.89[AFR][1000 genomes]
rs7643175	0.87[AFR][1000 genomes]
rs9849591	1.00[CEU][hapmap]

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:69250000-69281600	Weak transcription	Esophagus	oesophagus
4	chr3:69250200-69286000	Weak transcription	Colonic Mucosa	Colon
5	chr3:69250400-69280000	Weak transcription	Fetal Kidney	kidney
6	chr3:69253000-69297600	Weak transcription	Gastric	stomach
7	chr3:69253400-69277400	Weak transcription	Left Ventricle	heart
8	chr3:69254000-69280800	Weak transcription	Pancreas	Pancrea
9	chr3:69254000-69286000	Weak transcription	Right Ventricle	heart
10	chr3:69254600-69299000	Weak transcription	Fetal Brain Male	brain
11	chr3:69260000-69285800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:69261000-69280400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:69262200-69274200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:69262400-69276000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:69262600-69286200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:69263000-69273800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:69263000-69274200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr3:69263200-69274000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:69263200-69274200	Strong transcription	Dnd41	blood
20	chr3:69263200-69274400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:69263400-69275000	Weak transcription	Stomach Mucosa	stomach
22	chr3:69263600-69273800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr3:69263600-69275000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:69263800-69275600	Weak transcription	Brain Angular Gyrus	brain
25	chr3:69263800-69275600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:69263800-69281000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:69264000-69275000	Weak transcription	Aorta	Aorta
28	chr3:69264600-69275600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:69265200-69280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:69265600-69277400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:69266800-69281800	Weak transcription	Lung	lung
32	chr3:69267000-69273800	Strong transcription	Liver	Liver
33	chr3:69267200-69273800	Strong transcription	Fetal Lung	lung
34	chr3:69268000-69280000	Weak transcription	Placenta	Placenta
35	chr3:69268600-69274000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:69269000-69286000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:69269000-69287600	Weak transcription	Spleen	Spleen
38	chr3:69269000-69301400	Weak transcription	HMEC	breast
39	chr3:69269600-69273800	Strong transcription	HUVEC	blood vessel
40	chr3:69269800-69275200	Weak transcription	Brain Substantia Nigra	brain
41	chr3:69269800-69286000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr3:69270000-69275800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:69270000-69285800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:69271000-69286000	Weak transcription	Adipose Nuclei	Adipose
45	chr3:69271200-69273400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:69271200-69275000	Weak transcription	Fetal Heart	heart
47	chr3:69271200-69275000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr3:69271200-69275200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr3:69271200-69281000	Weak transcription	Fetal Muscle Leg	muscle
50	chr3:69271200-69281400	Weak transcription	HSMMtube	muscle

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