Variant report

Variant	rs7643175
Chromosome Location	chr3:69265291-69265292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4241386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4645139	1.00[AMR][1000 genomes]
rs4855367	0.84[AFR][1000 genomes]
rs6549189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764830	0.86[AFR][1000 genomes]
rs6777899	1.00[AMR][1000 genomes]
rs6798530	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7619197	1.00[AMR][1000 genomes]
rs7639320	1.00[AMR][1000 genomes]
rs9835163	0.87[AFR][1000 genomes]
rs9848630	1.00[AMR][1000 genomes]
rs9848940	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398378	chr3:69240573-69271936	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv237526	chr3:69264462-69265580	Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:69242600-69268800	Weak transcription	Spleen	Spleen
4	chr3:69246200-69266800	Weak transcription	HSMM	muscle
5	chr3:69250000-69269200	Weak transcription	Thymus	Thymus
6	chr3:69250000-69272400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:69250000-69281600	Weak transcription	Esophagus	oesophagus
8	chr3:69250200-69268800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:69250200-69268800	Weak transcription	Ovary	ovary
10	chr3:69250200-69286000	Weak transcription	Colonic Mucosa	Colon
11	chr3:69250400-69268400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:69250400-69280000	Weak transcription	Fetal Kidney	kidney
13	chr3:69253000-69266400	Weak transcription	Small Intestine	intestine
14	chr3:69253000-69297600	Weak transcription	Gastric	stomach
15	chr3:69253400-69277400	Weak transcription	Left Ventricle	heart
16	chr3:69253600-69266600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:69253600-69267600	Weak transcription	Placenta	Placenta
18	chr3:69254000-69280800	Weak transcription	Pancreas	Pancrea
19	chr3:69254000-69286000	Weak transcription	Right Ventricle	heart
20	chr3:69254600-69299000	Weak transcription	Fetal Brain Male	brain
21	chr3:69256600-69269200	Weak transcription	Adipose Nuclei	Adipose
22	chr3:69259400-69266600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:69260000-69285800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr3:69261000-69269800	Weak transcription	Fetal Muscle Leg	muscle
25	chr3:69261000-69272800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:69261000-69280400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:69262000-69265600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:69262200-69266200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:69262200-69274200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:69262400-69276000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:69262600-69286200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:69263000-69265400	Strong transcription	Fetal Intestine Large	intestine
33	chr3:69263000-69266200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:69263000-69269000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr3:69263000-69273800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:69263000-69274200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr3:69263200-69274000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:69263200-69274200	Strong transcription	Dnd41	blood
39	chr3:69263200-69274400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:69263400-69275000	Weak transcription	Stomach Mucosa	stomach
41	chr3:69263600-69273800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr3:69263600-69275000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr3:69263800-69265400	Weak transcription	Lung	lung
44	chr3:69263800-69266200	Weak transcription	Fetal Heart	heart
45	chr3:69263800-69266200	Weak transcription	Hela-S3	cervix
46	chr3:69263800-69267000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:69263800-69268400	Weak transcription	HMEC	breast
48	chr3:69263800-69268800	Weak transcription	Brain Anterior Caudate	brain
49	chr3:69263800-69269000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr3:69263800-69269200	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links