Variant report
| Variant | rs6553520 |
|---|---|
| Chromosome Location | chr4:171307353-171307354 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:57)
| rs_ID | r2[population] |
|---|---|
| rs11132848 | 0.88[AFR][1000 genomes] |
| rs11132850 | 0.85[AFR][1000 genomes] |
| rs11722438 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11727765 | 0.88[AFR][1000 genomes] |
| rs12640340 | 0.88[AFR][1000 genomes] |
| rs12715911 | 0.88[AFR][1000 genomes] |
| rs12715912 | 0.88[AFR][1000 genomes] |
| rs12715913 | 0.85[AFR][1000 genomes] |
| rs13106214 | 0.93[AFR][1000 genomes] |
| rs13107828 | 0.93[AFR][1000 genomes] |
| rs13124846 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13141317 | 0.88[AFR][1000 genomes] |
| rs13147596 | 0.85[AFR][1000 genomes] |
| rs13149636 | 0.88[AFR][1000 genomes] |
| rs13434911 | 0.88[AFR][1000 genomes] |
| rs13434915 | 0.88[AFR][1000 genomes] |
| rs1406518 | 0.96[AFR][1000 genomes] |
| rs1915539 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1919500 | 0.96[AFR][1000 genomes] |
| rs1919501 | 0.96[AFR][1000 genomes] |
| rs2176964 | 0.88[AFR][1000 genomes] |
| rs2176965 | 0.84[AFR][1000 genomes] |
| rs2176966 | 0.88[AFR][1000 genomes] |
| rs2176967 | 0.88[AFR][1000 genomes] |
| rs2331912 | 0.88[AFR][1000 genomes] |
| rs2331913 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2331914 | 0.88[AFR][1000 genomes] |
| rs2331915 | 0.88[AFR][1000 genomes] |
| rs2612398 | 1.00[AMR][1000 genomes] |
| rs2698226 | 1.00[AMR][1000 genomes] |
| rs2877518 | 0.88[AFR][1000 genomes] |
| rs4321601 | 0.88[AFR][1000 genomes] |
| rs4597785 | 0.88[AFR][1000 genomes] |
| rs4692604 | 0.88[AFR][1000 genomes] |
| rs4692605 | 0.88[AFR][1000 genomes] |
| rs4692828 | 0.88[AFR][1000 genomes] |
| rs4692831 | 0.88[AFR][1000 genomes] |
| rs6553513 | 0.88[AFR][1000 genomes] |
| rs6553517 | 0.89[AFR][1000 genomes] |
| rs6553518 | 0.89[AFR][1000 genomes] |
| rs6815451 | 0.88[AFR][1000 genomes] |
| rs6826287 | 0.88[AFR][1000 genomes] |
| rs6843666 | 0.96[AFR][1000 genomes] |
| rs7655336 | 0.88[AFR][1000 genomes] |
| rs7655750 | 0.88[AFR][1000 genomes] |
| rs7656816 | 0.88[AFR][1000 genomes] |
| rs7665189 | 0.88[AFR][1000 genomes] |
| rs7665574 | 0.88[AFR][1000 genomes] |
| rs7665609 | 0.82[AFR][1000 genomes] |
| rs7668801 | 0.92[AFR][1000 genomes] |
| rs7672355 | 0.81[AFR][1000 genomes] |
| rs7684984 | 0.86[AFR][1000 genomes] |
| rs7685034 | 0.92[AFR][1000 genomes] |
| rs7685794 | 0.88[AFR][1000 genomes] |
| rs7693095 | 0.81[AFR][1000 genomes] |
| rs7693311 | 0.81[AFR][1000 genomes] |
| rs9684346 | 0.88[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:171306600-171307800 | Weak transcription | HMEC | breast |
| 2 | chr4:171306800-171308200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
