Variant report

Variant	rs6561508
Chromosome Location	chr13:49810108-49810109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1407826	1.00[AMR][1000 genomes]
rs1937182	1.00[AMR][1000 genomes]
rs1983806	1.00[AMR][1000 genomes]
rs2181906	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3012124	1.00[AMR][1000 genomes]
rs3012130	1.00[AMR][1000 genomes]
rs4942807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57277286	1.00[AMR][1000 genomes]
rs57590763	1.00[AMR][1000 genomes]
rs58064396	1.00[AMR][1000 genomes]
rs58372993	1.00[AMR][1000 genomes]
rs61192069	1.00[AMR][1000 genomes]
rs61517389	1.00[AMR][1000 genomes]
rs6561495	1.00[AMR][1000 genomes]
rs6561498	1.00[AMR][1000 genomes]
rs6650333	1.00[AMR][1000 genomes]
rs7326409	1.00[AMR][1000 genomes]
rs7338704	1.00[AMR][1000 genomes]
rs7999767	1.00[AMR][1000 genomes]
rs9316432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832607	chr13:49756458-49920894	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49808000-49821200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr13:49808600-49811000	Enhancers	Liver	Liver
3	chr13:49809800-49810200	Bivalent Enhancer	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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