Variant report

Variant	rs2181906
Chromosome Location	chr13:49791536-49791537
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1407826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1937182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1983806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2987534	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3012124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3012130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3012134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4942806	0.95[ASN][1000 genomes]
rs4942807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57277286	1.00[AMR][1000 genomes]
rs57590763	1.00[AMR][1000 genomes]
rs58064396	1.00[AMR][1000 genomes]
rs58372993	1.00[AMR][1000 genomes]
rs60882749	1.00[EUR][1000 genomes]
rs61192069	1.00[AMR][1000 genomes]
rs61517389	1.00[AMR][1000 genomes]
rs6561495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6561498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6561508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6561516	0.82[ASN][1000 genomes]
rs6650333	1.00[AMR][1000 genomes]
rs7321706	1.00[EUR][1000 genomes]
rs7326409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7338704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7999767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs912193	1.00[ASN][1000 genomes]
rs912547	0.82[ASN][1000 genomes]
rs928039	0.85[ASN][1000 genomes]
rs9316432	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9535196	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832607	chr13:49756458-49920894	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49765600-49793800	Weak transcription	A549	lung
2	chr13:49778000-49793800	Weak transcription	Right Ventricle	heart
3	chr13:49782600-49792600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:49786600-49792600	Weak transcription	Left Ventricle	heart
5	chr13:49788800-49791800	Enhancers	Gastric	stomach
6	chr13:49789000-49791800	Enhancers	Stomach Mucosa	stomach
7	chr13:49789400-49792200	Weak transcription	Pancreas	Pancrea
8	chr13:49789400-49792400	Weak transcription	Spleen	Spleen
9	chr13:49789400-49792600	Weak transcription	Lung	lung
10	chr13:49789800-49791600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr13:49789800-49792400	Weak transcription	Brain Anterior Caudate	brain
12	chr13:49789800-49792400	Enhancers	Dnd41	blood
13	chr13:49791000-49793800	Weak transcription	HepG2	liver
14	chr13:49791200-49792600	Weak transcription	Right Atrium	heart
15	chr13:49791400-49792000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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