Variant report

Variant	rs6561602
Chromosome Location	chr13:51525375-51525376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51524476..51527887-chr13:51528238..51532155,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17074987	0.91[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs2038718	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2274069	0.81[ASN][1000 genomes]
rs4941677	0.89[ASN][1000 genomes]
rs4942943	0.86[CHB][hapmap];0.93[CHD][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs59310144	0.89[ASN][1000 genomes]
rs6561599	0.83[JPT][hapmap]
rs6561601	0.88[CHD][hapmap];0.83[ASN][1000 genomes]
rs6561603	0.81[ASN][1000 genomes]
rs730076	0.86[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7316955	0.81[YRI][hapmap]
rs7317618	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7324232	0.86[CHD][hapmap]
rs7329171	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7335206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7988945	0.91[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs9316512	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9535523	0.82[ASN][1000 genomes]
rs9535526	0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[ASN][1000 genomes]
rs9535534	0.88[ASN][1000 genomes]
rs9535535	0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6561602	RNASEH2B	cis	parietal	SCAN
rs6561602	RNASEH2B	cis	cerebellum	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
3	chr13:51496600-51529800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51496800-51533200	Weak transcription	NH-A	brain
5	chr13:51502400-51530800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr13:51502400-51531200	Weak transcription	NHLF	lung
7	chr13:51503000-51531600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr13:51503000-51538200	Weak transcription	HMEC	breast
9	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
10	chr13:51503400-51528200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr13:51503400-51531600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:51503600-51528400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr13:51503600-51551800	Strong transcription	Dnd41	blood
14	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
15	chr13:51505800-51527200	Weak transcription	Hela-S3	cervix
16	chr13:51506200-51525800	Weak transcription	HUVEC	blood vessel
17	chr13:51506600-51538600	Weak transcription	K562	blood
18	chr13:51508600-51527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:51509400-51541400	Weak transcription	A549	lung
20	chr13:51509600-51538800	Weak transcription	Right Ventricle	heart
21	chr13:51509600-51542400	Weak transcription	NHEK	skin
22	chr13:51509800-51527600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr13:51509800-51529600	Weak transcription	Brain Angular Gyrus	brain
24	chr13:51509800-51543200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr13:51509800-51550200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr13:51510000-51539600	Weak transcription	Fetal Heart	heart
27	chr13:51510000-51545400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr13:51510200-51525400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr13:51510200-51526400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr13:51510200-51543800	Weak transcription	Pancreas	Pancrea
31	chr13:51510200-51545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr13:51510200-51546200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr13:51510400-51527400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr13:51510600-51531600	Strong transcription	Primary B cells from cord blood	blood
35	chr13:51512000-51546200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr13:51512200-51529600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:51512200-51530000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:51512200-51531400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr13:51512200-51531800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr13:51512200-51532000	Strong transcription	Primary hematopoietic stem cells	blood
41	chr13:51512200-51539400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr13:51512400-51543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr13:51512800-51528600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr13:51512800-51542400	Weak transcription	Fetal Brain Male	brain
45	chr13:51513000-51525400	Weak transcription	Stomach Mucosa	stomach
46	chr13:51513000-51543800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr13:51513000-51552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr13:51513200-51540600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr13:51513200-51546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:51515200-51528400	Strong transcription	Primary T helper cells PMA-I stimulated	--

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