Variant report

Variant	rs6561603
Chromosome Location	chr13:51531815-51531816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51524476..51527887-chr13:51528238..51532155,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17074987	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2038718	0.94[ASN][1000 genomes]
rs4941677	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4941678	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942943	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59310144	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6561602	0.81[ASN][1000 genomes]
rs730076	0.95[ASN][1000 genomes]
rs7316955	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7317618	0.93[ASN][1000 genomes]
rs7319356	0.86[ASN][1000 genomes]
rs7321027	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7324232	0.87[ASN][1000 genomes]
rs7329171	0.93[ASN][1000 genomes]
rs7335206	0.94[ASN][1000 genomes]
rs7988945	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9316512	0.91[ASN][1000 genomes]
rs9535526	0.87[EUR][1000 genomes]
rs9535534	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9535535	0.92[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6561603	RNASEH2B	cis	Muscle Skeletal	GTEx
rs6561603	RNASEH2B	cis	Thyroid	GTEx
rs6561603	RNASEH2B	cis	Artery Tibial	GTEx
rs6561603	RNASEH2B	cis	Esophagus Muscularis	GTEx

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
2	chr13:51496800-51533200	Weak transcription	NH-A	brain
3	chr13:51503000-51538200	Weak transcription	HMEC	breast
4	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
5	chr13:51503600-51551800	Strong transcription	Dnd41	blood
6	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
7	chr13:51506600-51538600	Weak transcription	K562	blood
8	chr13:51509400-51541400	Weak transcription	A549	lung
9	chr13:51509600-51538800	Weak transcription	Right Ventricle	heart
10	chr13:51509600-51542400	Weak transcription	NHEK	skin
11	chr13:51509800-51543200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr13:51509800-51550200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:51510000-51539600	Weak transcription	Fetal Heart	heart
14	chr13:51510000-51545400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr13:51510200-51543800	Weak transcription	Pancreas	Pancrea
16	chr13:51510200-51545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr13:51510200-51546200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr13:51512000-51546200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr13:51512200-51532000	Strong transcription	Primary hematopoietic stem cells	blood
20	chr13:51512200-51539400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr13:51512400-51543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr13:51512800-51542400	Weak transcription	Fetal Brain Male	brain
23	chr13:51513000-51543800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr13:51513000-51552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr13:51513200-51540600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr13:51513200-51546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr13:51515200-51537400	Weak transcription	HepG2	liver
28	chr13:51516400-51548800	Weak transcription	Gastric	stomach
29	chr13:51517200-51543800	Weak transcription	Spleen	Spleen
30	chr13:51517400-51535200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr13:51518000-51538200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr13:51518000-51550400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr13:51518000-51551200	Weak transcription	Placenta	Placenta
34	chr13:51518200-51532000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr13:51518200-51539000	Weak transcription	Esophagus	oesophagus
36	chr13:51518200-51543800	Weak transcription	Lung	lung
37	chr13:51518600-51539000	Weak transcription	Ovary	ovary
38	chr13:51518600-51552000	Weak transcription	Fetal Brain Female	brain
39	chr13:51518800-51549000	Weak transcription	Fetal Intestine Small	intestine
40	chr13:51521400-51538600	Weak transcription	Aorta	Aorta
41	chr13:51521400-51549000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr13:51523400-51534000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr13:51523600-51555200	Weak transcription	HSMMtube	muscle
44	chr13:51523800-51546000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr13:51523800-51550600	Weak transcription	HSMM	muscle
46	chr13:51524000-51535200	Weak transcription	Fetal Kidney	kidney
47	chr13:51524400-51538800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr13:51524600-51548400	Weak transcription	NHDF-Ad	bronchial
49	chr13:51524600-51550400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr13:51524800-51534600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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