Variant report

Variant	rs7321027
Chromosome Location	chr13:51526758-51526759
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51524476..51527887-chr13:51528238..51532155,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17074987	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2038718	0.94[ASN][1000 genomes]
rs4941677	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4941678	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4942943	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59310144	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6561603	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs730076	0.93[ASN][1000 genomes]
rs7316955	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317618	0.94[ASN][1000 genomes]
rs7319356	0.89[ASN][1000 genomes]
rs7324232	0.90[ASN][1000 genomes]
rs7329171	0.94[ASN][1000 genomes]
rs7335206	0.94[ASN][1000 genomes]
rs7988945	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9316512	0.94[ASN][1000 genomes]
rs9535534	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9535535	0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7321027	RNASEH2B	cis	Esophagus Muscularis	GTEx
rs7321027	RNASEH2B	cis	Muscle Skeletal	GTEx

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
3	chr13:51496600-51529800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51496800-51533200	Weak transcription	NH-A	brain
5	chr13:51502400-51530800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr13:51502400-51531200	Weak transcription	NHLF	lung
7	chr13:51503000-51531600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr13:51503000-51538200	Weak transcription	HMEC	breast
9	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
10	chr13:51503400-51528200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr13:51503400-51531600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:51503600-51528400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr13:51503600-51551800	Strong transcription	Dnd41	blood
14	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
15	chr13:51505800-51527200	Weak transcription	Hela-S3	cervix
16	chr13:51506600-51538600	Weak transcription	K562	blood
17	chr13:51508600-51527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr13:51509400-51541400	Weak transcription	A549	lung
19	chr13:51509600-51538800	Weak transcription	Right Ventricle	heart
20	chr13:51509600-51542400	Weak transcription	NHEK	skin
21	chr13:51509800-51527600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:51509800-51529600	Weak transcription	Brain Angular Gyrus	brain
23	chr13:51509800-51543200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr13:51509800-51550200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr13:51510000-51539600	Weak transcription	Fetal Heart	heart
26	chr13:51510000-51545400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr13:51510200-51543800	Weak transcription	Pancreas	Pancrea
28	chr13:51510200-51545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr13:51510200-51546200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr13:51510400-51527400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr13:51510600-51531600	Strong transcription	Primary B cells from cord blood	blood
32	chr13:51512000-51546200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr13:51512200-51529600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:51512200-51530000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr13:51512200-51531400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr13:51512200-51531800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr13:51512200-51532000	Strong transcription	Primary hematopoietic stem cells	blood
38	chr13:51512200-51539400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr13:51512400-51543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr13:51512800-51528600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr13:51512800-51542400	Weak transcription	Fetal Brain Male	brain
42	chr13:51513000-51543800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr13:51513000-51552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr13:51513200-51540600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr13:51513200-51546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr13:51515200-51528400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr13:51515200-51537400	Weak transcription	HepG2	liver
48	chr13:51516400-51548800	Weak transcription	Gastric	stomach
49	chr13:51517000-51529400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr13:51517200-51543800	Weak transcription	Spleen	Spleen

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