Variant report

Variant	rs4941678
Chromosome Location	chr13:51540733-51540734
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17074987	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2038718	0.92[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs4941677	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4942943	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59310144	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6561601	0.84[CEU][hapmap]
rs6561602	0.85[YRI][hapmap]
rs6561603	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs730076	0.92[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs7316955	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7317618	0.91[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs7319356	0.85[ASN][1000 genomes]
rs7321027	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7324232	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7329171	0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.91[ASN][1000 genomes]
rs7335206	0.92[ASN][1000 genomes]
rs7988945	0.88[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9316512	0.92[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs9535526	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs9535534	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535535	0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4941678	RNASEH2B	cis	Muscle Skeletal	GTEx
rs4941678	RNASEH2B	cis	Esophagus Muscularis	GTEx

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
2	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
3	chr13:51503600-51551800	Strong transcription	Dnd41	blood
4	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
5	chr13:51509400-51541400	Weak transcription	A549	lung
6	chr13:51509600-51542400	Weak transcription	NHEK	skin
7	chr13:51509800-51543200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr13:51509800-51550200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr13:51510000-51545400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr13:51510200-51543800	Weak transcription	Pancreas	Pancrea
11	chr13:51510200-51545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:51510200-51546200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:51512000-51546200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr13:51512400-51543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr13:51512800-51542400	Weak transcription	Fetal Brain Male	brain
16	chr13:51513000-51543800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr13:51513000-51552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr13:51513200-51546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:51516400-51548800	Weak transcription	Gastric	stomach
20	chr13:51517200-51543800	Weak transcription	Spleen	Spleen
21	chr13:51518000-51550400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:51518000-51551200	Weak transcription	Placenta	Placenta
23	chr13:51518200-51543800	Weak transcription	Lung	lung
24	chr13:51518600-51552000	Weak transcription	Fetal Brain Female	brain
25	chr13:51518800-51549000	Weak transcription	Fetal Intestine Small	intestine
26	chr13:51521400-51549000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr13:51523600-51555200	Weak transcription	HSMMtube	muscle
28	chr13:51523800-51546000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr13:51523800-51550600	Weak transcription	HSMM	muscle
30	chr13:51524600-51548400	Weak transcription	NHDF-Ad	bronchial
31	chr13:51524600-51550400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr13:51524800-51552200	Weak transcription	Colonic Mucosa	Colon
33	chr13:51525400-51547400	Weak transcription	Osteobl	bone
34	chr13:51525600-51543800	Weak transcription	Fetal Stomach	stomach
35	chr13:51525800-51547400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:51526200-51544600	Weak transcription	Colon Smooth Muscle	Colon
37	chr13:51526200-51549000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr13:51526200-51550000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr13:51527600-51543800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr13:51527600-51545000	Weak transcription	Hela-S3	cervix
41	chr13:51530200-51541000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr13:51530400-51541800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr13:51530400-51546200	Weak transcription	Brain Substantia Nigra	brain
44	chr13:51530600-51563400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr13:51532200-51542200	Weak transcription	Brain Germinal Matrix	brain
46	chr13:51532600-51545400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr13:51532600-51551400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr13:51533400-51552200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr13:51533600-51542200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr13:51534000-51541400	Strong transcription	Primary monocytes fromperipheralblood	blood

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